Cell Complex Neural Networks
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Abstract (arXiv)
Cell complexes are topological spaces constructed from simple blocks called cells. They generalize graphs, simplicial complexes, and polyhedral complexes that form important domains for practical applications. They also provide a combinatorial formalism that allows the inclusion of complicated relationships of restrictive structures such as graphs and meshes. In this paper, we propose Cell Complexes Neural Networks (CXNs), a general, combinatorial and unifying construction for performing neural network-type computations on cell complexes. We introduce an inter-cellular message passing scheme on cell complexes that takes the topology of the underlying space into account and generalizes message passing scheme to graphs. Finally, we introduce a unified cell complex encoder-decoder framework that enables learning representation of cells for a given complex inside the Euclidean spaces. In particular, we show how our cell complex autoencoder construction can give, in the special case cell2vec, a generalization for node2vec.
Key facts. Cited by 67 papers in the map (data through 14 Oct 2026). First posted on arXiv 2 Oct 2020.
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Citing papers per year: 2021: 8; 2022: 6; 2023: 15; 2024: 14; 2025: 11; 2026: 13.
67 papers.
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- 2021Weisfeiler and Lehman Go Topological: Message Passing Simplicial Networkscited by 221
- 2021Weisfeiler and Lehman Go Cellular: CW Networkscited by 218
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 66
- 2023Architectures of Topological Deep Learning: A Survey of Message-Passing Topological Neural Networkscited by 43
- 2022Simplicial Attention Networkscited by 41
- 2022Cell Attention Networkscited by 35
- 2022Group SELFIES: A Robust Fragment-Based Molecular String Representationcited by 33
- 2021Signal Processing on Cell Complexescited by 31
- 2023Convolutional Learning on Simplicial Complexescited by 27
- 2024TopoBench: A Framework for Benchmarking Topological Deep Learningcited by 24
- 2024TopoX: A Suite of Python Packages for Machine Learning on Topological Domainscited by 22
- 2024E(n) Equivariant Topological Neural Networkscited by 22
38 more
- 2021BScNets: Block Simplicial Complex Neural Networkscited by 21
- 2024Beyond Euclid: An Illustrated Guide to Modern Machine Learning with Geometric, Topological, and Algebraic Structurescited by 20
- 2023From Latent Graph to Latent Topology Inference: Differentiable Cell Complex Modulecited by 19
- 2023Differentiable Euler Characteristic Transforms for Shape Classificationcited by 18
- 2023Simplicial Representation Learning with Neural k-Formscited by 18
- 2024TopoTune : A Framework for Generalized Combinatorial Complex Neural Networkscited by 18
- 2021Simplicial Complex Representation Learningcited by 17
- 2021Dist2Cycle: A Simplicial Neural Network for Homology Localizationcited by 16
- 2023Simplicial Hopfield networkscited by 16
- 2023Gaussian Processes on Cellular Complexescited by 15
- 2023Combinatorial Complexes: Bridging the Gap Between Cell Complexes and Hypergraphscited by 15
- 2023CIN++: Enhancing Topological Message Passingcited by 14
- 2025Copresheaf Topological Neural Networks: A Generalized Deep Learning Frameworkcited by 12
- 2024Attending to Topological Spaces: The Cellular Transformercited by 11
- 2023Dirac signal processing of higher-order topological signalscited by 9
- 2021Data-Centric AI Requires Rethinking Data Notioncited by 8
- 2023Topo-MLP : A Simplicial Network Without Message Passingcited by 7
- 2022A Topological Deep Learning Framework for Neural Spike Decodingcited by 6
- 2023CAT-Walk: Inductive Hypergraph Learning via Set Walkscited by 6
- 2021Persistent Homology and Graphs Representation Learningcited by 5
- 2022Pooling Strategies for Simplicial Convolutional Networkscited by 5
- 2023Representing Edge Flows on Graphs via Sparse Cell Complexescited by 5
- 2025HOPSE: Scalable Higher-Order Positional and Structural Encoder for Combinatorial Representationscited by 5
- 2024Demystifying Higher-Order Graph Neural Networkscited by 4
- 2024Topology meets Machine Learning: An Introduction using the Euler Characteristic Transformcited by 4
- 2023Zoo Guide to Network Embeddingcited by 2
- 2024Molecular topological deep learning for polymer property predictioncited by 2
- 2025Graph Persistence goes Spectralcited by 2
- 2025Demystifying Topological Message-Passing with Relational Structures: A Case Study on Oversquashing in Simplicial Message-Passingcited by 2
- 2022Semantic-Native Communication: A Simplicial Complex Perspectivecited by 1
- 2024Spatiotemporal Graph Learning with Direct Volumetric Information Passing and Feature Enhancementcited by 1
- 2024Dirac-Equation Signal Processing: Physics Boosts Topological Machine Learningcited by 1
- 2025CellCLAT: Preserving Topology and Trimming Redundancy in Self-Supervised Cellular Contrastive Learningcited by 1
- 2025Heat Kernel Goes Topologicalcited by 1
- 2025On the Sheafification of Higher-Order Message Passingcited by 1
- 2026Full-Spectrum Graph Neural Networks: Expressive and Scalablecited by 1
- 2023Neural Embeddings for Protein Graphscited by 0
- 2024Topological Neural Networks: Mitigating the Bottlenecks of Graph Neural Networks via Higher-Order Interactionscited by 0
50 most cited of 67 All 67 (JSON)
- 2026Topology-Consistent Task Planning over Cellular Workflow Complexes for LLM-based Agents4 Oct 2026
- 2026TopoEmbedX: A General Framework for Representation Learning on Topological Domains29 Sep 2026
- 2026Combinatorial Network-Based Manifold Topological Deep Learning for Image Analysis21 Sep 2026
- 2026Differentiable Lifting for Topological Neural Networks2 Aug 2026
- 2026Cellular Sheaf Neural Operators for Structure-Preserving Surrogate Modeling of Constrained PDEs31 May 2026
- 2026Scaling Higher-Order Graph Learning with Maximal Clique Complexes29 May 2026
- 2026TopoU-Net: a U-Net architecture for topological domains11 May 2026
- 2026No Triangulation Without Representation: Generalization in Topological Deep Learning7 May 2026
- 2026Full-Spectrum Graph Neural Networks: Expressive and Scalable7 May 2026
- 2026Weisfeiler Lehman Test on Combinatorial Complexes: Generalized Expressive Power of Topological Neural Networks1 May 2026
- 2026Topology of Reasoning: Retrieved Cell Complex-Augmented Generation for Textual Graph Question Answering22 Feb 2026
- 2026From Classical to Topological Neural Networks Under Uncertainty10 Feb 2026
38 more
- 2026A Sheaf-Theoretic and Topological Perspective on Complex Network Modeling and Attention Mechanisms in Graph Neural Models29 Jan 2026
- 2025HTG-GCL: Leveraging Hierarchical Topological Granularity from Cellular Complexes for Graph Contrastive Learning30 Nov 2025
- 2025On the Sheafification of Higher-Order Message Passing27 Sep 2025
- 2025Heat Kernel Goes Topological16 Jul 2025
- 2025Higher-Order Graph Databases24 Jun 2025
- 2025Demystifying Topological Message-Passing with Relational Structures: A Case Study on Oversquashing in Simplicial Message-Passing6 Jun 2025
- 2025Graph Persistence goes Spectral6 Jun 2025
- 2025CellCLAT: Preserving Topology and Trimming Redundancy in Self-Supervised Cellular Contrastive Learning27 May 2025
- 2025Copresheaf Topological Neural Networks: A Generalized Deep Learning Framework27 May 2025
- 2025Directed Semi-Simplicial Learning with Applications to Brain Activity Decoding23 May 2025
- 2025HOPSE: Scalable Higher-Order Positional and Structural Encoder for Combinatorial Representations21 May 2025
- 2025Quotient Complex Transformer (QCformer) for Perovskite Data Analysis14 May 2025
- 2024Dirac-Equation Signal Processing: Physics Boosts Topological Machine Learning6 Dec 2024
- 2024Topology meets Machine Learning: An Introduction using the Euler Characteristic Transform23 Oct 2024
- 2024TopoTune : A Framework for Generalized Combinatorial Complex Neural Networks9 Oct 2024
- 2024Molecular topological deep learning for polymer property prediction7 Oct 2024
- 2024Spatiotemporal Graph Learning with Direct Volumetric Information Passing and Feature Enhancement26 Sep 2024
- 2024CW-CNN & CW-AN: Convolutional Networks and Attention Networks for CW-Complexes29 Aug 2024
- 2024Beyond Euclid: An Illustrated Guide to Modern Machine Learning with Geometric, Topological, and Algebraic Structures12 Jul 2024
- 2024Demystifying Higher-Order Graph Neural Networks18 Jun 2024
- 2024TopoBench: A Framework for Benchmarking Topological Deep Learning9 Jun 2024
- 2024E(n) Equivariant Topological Neural Networks24 May 2024
- 2024Attending to Topological Spaces: The Cellular Transformer23 May 2024
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learning14 Feb 2024
- 2024Topological Neural Networks: Mitigating the Bottlenecks of Graph Neural Networks via Higher-Order Interactions10 Feb 2024
- 2024TopoX: A Suite of Python Packages for Machine Learning on Topological Domains4 Feb 2024
- 2023Topo-MLP : A Simplicial Network Without Message Passing19 Dec 2023
- 2023Combinatorial Complexes: Bridging the Gap Between Cell Complexes and Hypergraphs15 Dec 2023
- 2023Simplicial Representation Learning with Neural k-Forms13 Dec 2023
- 2023Gaussian Processes on Cellular Complexes2 Nov 2023
- 2023Differentiable Euler Characteristic Transforms for Shape Classification11 Oct 2023
- 2023Representing Edge Flows on Graphs via Sparse Cell Complexes4 Sep 2023
- 2023CAT-Walk: Inductive Hypergraph Learning via Set Walks19 Jun 2023
- 2023Neural Embeddings for Protein Graphs7 Jun 2023
- 2023CIN++: Enhancing Topological Message Passing6 Jun 2023
- 2023From Latent Graph to Latent Topology Inference: Differentiable Cell Complex Module25 May 2023
- 2023Simplicial Hopfield networks9 May 2023
- 2023Zoo Guide to Network Embedding5 May 2023
50 newest of 67 All 67 (JSON)
- 2021Weisfeiler and Lehman Go Topological: Message Passing Simplicial Networkscited by 221
- 2021Weisfeiler and Lehman Go Cellular: CW Networkscited by 218
- 2024Position: Topological Deep Learning is the New Frontier for Relational Learningcited by 66
- 2023Architectures of Topological Deep Learning: A Survey of Message-Passing Topological Neural Networkscited by 43
- 2022Simplicial Attention Networkscited by 41
- 2022Cell Attention Networkscited by 35
- 2022Group SELFIES: A Robust Fragment-Based Molecular String Representationcited by 33
- 2021Signal Processing on Cell Complexescited by 31
- 2023Convolutional Learning on Simplicial Complexescited by 27
- 2024TopoBench: A Framework for Benchmarking Topological Deep Learningcited by 24
- 2024TopoX: A Suite of Python Packages for Machine Learning on Topological Domainscited by 22
- 2024E(n) Equivariant Topological Neural Networkscited by 22
12 most cited of 65 All 65 (JSON)
- 2026TopoEmbedX: A General Framework for Representation Learning on Topological Domains29 Sep 2026
- 2026Combinatorial Network-Based Manifold Topological Deep Learning for Image Analysis21 Sep 2026
- 2026Differentiable Lifting for Topological Neural Networks2 Aug 2026
- 2026Cellular Sheaf Neural Operators for Structure-Preserving Surrogate Modeling of Constrained PDEs31 May 2026
- 2026Scaling Higher-Order Graph Learning with Maximal Clique Complexes29 May 2026
- 2026TopoU-Net: a U-Net architecture for topological domains11 May 2026
- 2026No Triangulation Without Representation: Generalization in Topological Deep Learning7 May 2026
- 2026Full-Spectrum Graph Neural Networks: Expressive and Scalable7 May 2026
- 2026Weisfeiler Lehman Test on Combinatorial Complexes: Generalized Expressive Power of Topological Neural Networks1 May 2026
- 2026From Classical to Topological Neural Networks Under Uncertainty10 Feb 2026
- 2026A Sheaf-Theoretic and Topological Perspective on Complex Network Modeling and Attention Mechanisms in Graph Neural Models29 Jan 2026
- 2025HTG-GCL: Leveraging Hierarchical Topological Granularity from Cellular Complexes for Graph Contrastive Learning30 Nov 2025
12 newest of 65 All 65 (JSON)