Autonomous discovery in the chemical sciences part II: Outlook
Not on the map. Why?
Abstract (arXiv)
This two-part review examines how automation has contributed to different aspects of discovery in the chemical sciences. In this second part, we reflect on a selection of exemplary studies. It is increasingly important to articulate what the role of automation and computation has been in the scientific process and how that has or has not accelerated discovery. One can argue that even the best automated systems have yet to ``discover'' despite being incredibly useful as laboratory assistants. We must carefully consider how they have been and can be applied to future problems of chemical discovery in order to effectively design and interact with future autonomous platforms. The majority of this article defines a large set of open research directions, including improving our ability to work with complex data, build empirical models, automate both physical and computational experiments for validation, select experiments, and evaluate whether we are making progress toward the ultimate goal of autonomous discovery. Addressing these practical and methodological challenges will greatly advance the extent to which autonomous systems can make meaningful discoveries.
Key facts. Cited by 26 papers in the map (data through 7 Oct 2026). First posted on arXiv 30 Mar 2020.
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Citing papers per year: 2021: 8; 2022: 8; 2023: 2; 2024: 5; 2025: 0; 2026: 3.
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- 2021Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Developmentcited by 258
- 2022Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoderscited by 99
- 2022Local Latent Space Bayesian Optimization over Structured Inputscited by 78
- 2021Amortized Tree Generation for Bottom-up Synthesis Planning and Synthesizable Molecular Designcited by 44
- 2021DOCKSTRING: easy molecular docking yields better benchmarks for ligand designcited by 33
- 2022Quantum Machine Learning Framework for Virtual Screening in Drug Discovery: a Prospective Quantum Advantagecited by 18
- 2024Generative Artificial Intelligence for Navigating Synthesizable Chemical Spacecited by 18
- 2022Bayesian optimization with known experimental and design constraints for chemistry applicationscited by 11
- 2022Improving Small Molecule Generation using Mutual Information Machinecited by 10
- 2026Agentic AI Scientists Are Not Built For Autonomous Scientific Discoverycited by 7
- 2021Golem: An algorithm for robust experiment and process optimizationcited by 6
- 2024Procedural Synthesis of Synthesizable Moleculescited by 6
14 more
- 2021Towards Futuristic Autonomous Experimentation--A Surprise-Reacting Sequential Experiment Policycited by 4
- 2022Synthetic data enable experiments in atomistic machine learningcited by 3
- 2026The AnIML Ontology: Enabling Semantic Interoperability for Large-Scale Experimental Data in Interconnected Scientific Labscited by 3
- 2021Gemini: Dynamic Bias Correction for Autonomous Experimentation and Molecular Simulationcited by 2
- 2022Autonomous Drug Design with Multi-Armed Banditscited by 2
- 2024MFBind: a Multi-Fidelity Approach for Evaluating Drug Compounds in Practical Generative Modelingcited by 2
- 2024Advancing Extrapolative Predictions of Material Properties through Learning to Learncited by 2
- 2021An In-depth Summary of Recent Artificial Intelligence Applications in Drug Designcited by 1
- 2022Active Learning Exploration of Transition Metal Complexes to Discover Method-Insensitive and Synthetically Accessible Chromophorescited by 1
- 2023Domain-agnostic and Multi-level Evaluation of Generative Modelscited by 1
- 2023Speculative Exploration on the Concept of Artificial Agents Conducting Autonomous Researchcited by 1
- 2024MF-LAL: Drug Compound Generation Using Multi-Fidelity Latent Space Active Learningcited by 1
- 2021Toward Building Science Discovery Machinescited by 0
- 2026Generic Vision and Cross-Attention for Reaction Yield Predictioncited by 0
- 2026Generic Vision and Cross-Attention for Reaction Yield Prediction1 Aug 2026
- 2026Agentic AI Scientists Are Not Built For Autonomous Scientific Discovery9 May 2026
- 2026The AnIML Ontology: Enabling Semantic Interoperability for Large-Scale Experimental Data in Interconnected Scientific Labs2 Apr 2026
- 2024MF-LAL: Drug Compound Generation Using Multi-Fidelity Latent Space Active Learning15 Oct 2024
- 2024Generative Artificial Intelligence for Navigating Synthesizable Chemical Space4 Oct 2024
- 2024Procedural Synthesis of Synthesizable Molecules24 Aug 2024
- 2024Advancing Extrapolative Predictions of Material Properties through Learning to Learn25 Mar 2024
- 2024MFBind: a Multi-Fidelity Approach for Evaluating Drug Compounds in Practical Generative Modeling16 Feb 2024
- 2023Speculative Exploration on the Concept of Artificial Agents Conducting Autonomous Research6 Dec 2023
- 2023Domain-agnostic and Multi-level Evaluation of Generative Models20 Jan 2023
- 2022Synthetic data enable experiments in atomistic machine learning29 Nov 2022
- 2022Improving Small Molecule Generation using Mutual Information Machine18 Aug 2022
14 more
- 2022Active Learning Exploration of Transition Metal Complexes to Discover Method-Insensitive and Synthetically Accessible Chromophores10 Aug 2022
- 2022Autonomous Drug Design with Multi-Armed Bandits4 Jul 2022
- 2022Quantum Machine Learning Framework for Virtual Screening in Drug Discovery: a Prospective Quantum Advantage8 Apr 2022
- 2022Bayesian optimization with known experimental and design constraints for chemistry applications29 Mar 2022
- 2022Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders23 Mar 2022
- 2022Local Latent Space Bayesian Optimization over Structured Inputs28 Jan 2022
- 2021Towards Futuristic Autonomous Experimentation--A Surprise-Reacting Sequential Experiment Policy1 Dec 2021
- 2021DOCKSTRING: easy molecular docking yields better benchmarks for ligand design29 Oct 2021
- 2021Amortized Tree Generation for Bottom-up Synthesis Planning and Synthesizable Molecular Design12 Oct 2021
- 2021An In-depth Summary of Recent Artificial Intelligence Applications in Drug Design10 Oct 2021
- 2021Toward Building Science Discovery Machines24 Mar 2021
- 2021Golem: An algorithm for robust experiment and process optimization5 Mar 2021
- 2021Gemini: Dynamic Bias Correction for Autonomous Experimentation and Molecular Simulation5 Mar 2021
- 2021Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development18 Feb 2021
- 2021Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Developmentcited by 258
- 2022Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoderscited by 99
- 2022Local Latent Space Bayesian Optimization over Structured Inputscited by 78
- 2021Amortized Tree Generation for Bottom-up Synthesis Planning and Synthesizable Molecular Designcited by 44
- 2021DOCKSTRING: easy molecular docking yields better benchmarks for ligand designcited by 33
- 2022Quantum Machine Learning Framework for Virtual Screening in Drug Discovery: a Prospective Quantum Advantagecited by 18
- 2024Generative Artificial Intelligence for Navigating Synthesizable Chemical Spacecited by 18
- 2022Bayesian optimization with known experimental and design constraints for chemistry applicationscited by 11
- 2022Improving Small Molecule Generation using Mutual Information Machinecited by 10
- 2021Golem: An algorithm for robust experiment and process optimizationcited by 6
- 2024Procedural Synthesis of Synthesizable Moleculescited by 6
- 2021Towards Futuristic Autonomous Experimentation--A Surprise-Reacting Sequential Experiment Policycited by 4
12 most cited of 25 All 25 (JSON)
- 2026Generic Vision and Cross-Attention for Reaction Yield Prediction1 Aug 2026
- 2026The AnIML Ontology: Enabling Semantic Interoperability for Large-Scale Experimental Data in Interconnected Scientific Labs2 Apr 2026
- 2024MF-LAL: Drug Compound Generation Using Multi-Fidelity Latent Space Active Learning15 Oct 2024
- 2024Generative Artificial Intelligence for Navigating Synthesizable Chemical Space4 Oct 2024
- 2024Procedural Synthesis of Synthesizable Molecules24 Aug 2024
- 2024Advancing Extrapolative Predictions of Material Properties through Learning to Learn25 Mar 2024
- 2024MFBind: a Multi-Fidelity Approach for Evaluating Drug Compounds in Practical Generative Modeling16 Feb 2024
- 2023Speculative Exploration on the Concept of Artificial Agents Conducting Autonomous Research6 Dec 2023
- 2023Domain-agnostic and Multi-level Evaluation of Generative Models20 Jan 2023
- 2022Synthetic data enable experiments in atomistic machine learning29 Nov 2022
- 2022Improving Small Molecule Generation using Mutual Information Machine18 Aug 2022
- 2022Active Learning Exploration of Transition Metal Complexes to Discover Method-Insensitive and Synthetically Accessible Chromophores10 Aug 2022
12 newest of 25 All 25 (JSON)