mlsanityData to 7 Oct 2026

GraphLIME: Local Interpretable Model Explanations for Graph Neural Networks

arXiv 2001.06216 ↗First posted 17 Jan 2020cs.LG stat.MLcited by 209

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Abstract (arXiv)

Graph structured data has wide applicability in various domains such as physics, chemistry, biology, computer vision, and social networks, to name a few. Recently, graph neural networks (GNN) were shown to be successful in effectively representing graph structured data because of their good performance and generalization ability. GNN is a deep learning based method that learns a node representation by combining specific nodes and the structural/topological information of a graph. However, like other deep models, explaining the effectiveness of GNN models is a challenging task because of the complex nonlinear transformations made over the iterations. In this paper, we propose GraphLIME, a local interpretable model explanation for graphs using the Hilbert-Schmidt Independence Criterion (HSIC) Lasso, which is a nonlinear feature selection method. GraphLIME is a generic GNN-model explanation framework that learns a nonlinear interpretable model locally in the subgraph of the node being explained. More specifically, to explain a node, we generate a nonlinear interpretable model from its N-hop neighborhood and then compute the K most representative features as the explanations of its prediction using HSIC Lasso. Through experiments on two real-world datasets, the explanations of GraphLIME are found to be of extraordinary degree and more descriptive in comparison to the existing explanation methods.

Key facts. Cited by 209 papers in the map (data through 7 Oct 2026). First posted on arXiv 17 Jan 2020.

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Cited by year (2026 to 7 Oct)

Citing papers per year: 2021: 31; 2022: 54; 2023: 41; 2024: 42; 2025: 29; 2026: 12.

209 papers.

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  1. 2021On Explainability of Graph Neural Networks via Subgraph Explorationscited by 280
  2. 2022Interpretable and Generalizable Graph Learning via Stochastic Attention Mechanismcited by 171
  3. 2021Benchmarking and Survey of Explanation Methods for Black Box Modelscited by 136
  4. 2021CF-GNNExplainer: Counterfactual Explanations for Graph Neural Networkscited by 118
  5. 2022A Comprehensive Survey on Trustworthy Graph Neural Networks: Privacy, Robustness, Fairness, and Explainabilitycited by 118
  6. 2021Interpretable Deep Learning: Interpretation, Interpretability, Trustworthiness, and Beyondcited by 116
  7. 2022XAI for Transformers: Better Explanations through Conservative Propagationcited by 100
  8. 2021ProtGNN: Towards Self-Explaining Graph Neural Networkscited by 96
  9. 2021Graph Neural Networks in Network Neurosciencecited by 91
  10. 2022Trustworthy Graph Neural Networks: Aspects, Methods and Trendscited by 88
  11. 2022Evaluating Explainability for Graph Neural Networkscited by 85
  12. 2022Learning and Evaluating Graph Neural Network Explanations based on Counterfactual and Factual Reasoningcited by 78
38 more
  1. 2021Towards Self-Explainable Graph Neural Networkcited by 75
  2. 2022Global Explainability of GNNs via Logic Combination of Learned Conceptscited by 64
  3. 2021GraphSVX: Shapley Value Explanations for Graph Neural Networkscited by 63
  4. 2022GraphFramEx: Towards Systematic Evaluation of Explainability Methods for Graph Neural Networkscited by 57
  5. 2021Explainability-based Backdoor Attacks Against Graph Neural Networkscited by 42
  6. 2022GStarX: Explaining Graph Neural Networks with Structure-Aware Cooperative Gamescited by 42
  7. 2023A Perspective on Explainable Artificial Intelligence Methods: SHAP and LIMEcited by 42
  8. 2021A Survey on Graph-Based Deep Learning for Computational Histopathologycited by 41
  9. 2023SE-GSL: A General and Effective Graph Structure Learning Framework through Structural Entropy Optimizationcited by 35
  10. 2021Zorro: Valid, Sparse, and Stable Explanations in Graph Neural Networkscited by 34
  11. 2022Reinforced Causal Explainer for Graph Neural Networkscited by 34
  12. 2022GNNInterpreter: A Probabilistic Generative Model-Level Explanation for Graph Neural Networkscited by 34
  13. 2022Explaining the Explainers in Graph Neural Networks: a Comparative Studycited by 34
  14. 2021Counterfactual Graphs for Explainable Classification of Brain Networkscited by 33
  15. 2021MEG: Generating Molecular Counterfactual Explanations for Deep Graph Networkscited by 32
  16. 2024Alleviating Structural Distribution Shift in Graph Anomaly Detectioncited by 31
  17. 2023Joint Learning of Label and Environment Causal Independence for Graph Out-of-Distribution Generalizationcited by 29
  18. 2023A Survey on Explainability of Graph Neural Networkscited by 28
  19. 2022Interpretable Geometric Deep Learning via Learnable Randomness Injectioncited by 27
  20. 2023DAG Matters! GFlowNets Enhanced Explainer For Graph Neural Networkscited by 27
  21. 2023TempME: Towards the Explainability of Temporal Graph Neural Networks via Motif Discoverycited by 27
  22. 2022A Survey of Explainable Graph Neural Networks: Taxonomy and Evaluation Metricscited by 26
  23. 2023PaGE-Link: Path-based Graph Neural Network Explanation for Heterogeneous Link Predictioncited by 25
  24. 2022Fairness and Explainability: Bridging the Gap Towards Fair Model Explanationscited by 22
  25. 2023Counterfactual Learning on Graphs: A Surveycited by 22
  26. 2022A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protectioncited by 20
  27. 2022FlowX: Towards Explainable Graph Neural Networks via Message Flowscited by 20
  28. 2024Uncertainty in Graph Neural Networks: A Surveycited by 20
  29. 2023Explainable Brain Age Prediction using coVariance Neural Networkscited by 19
  30. 2021Bridging the Gap between Spatial and Spectral Domains: A Unified Framework for Graph Neural Networkscited by 18
  31. 2021Jointly Attacking Graph Neural Network and its Explanationscited by 18
  32. 2023Distill n' Explain: explaining graph neural networks using simple surrogatescited by 18
  33. 2023DEGREE: Decomposition Based Explanation For Graph Neural Networkscited by 18
  34. 2021SurvNAM: The machine learning survival model explanationcited by 16
  35. 2022Private Graph Extraction via Feature Explanationscited by 16
  36. 2022Characterizing the Influence of Graph Elementscited by 16
  37. 2021A Meta-Learning Approach for Training Explainable Graph Neural Networkscited by 15
  38. 2021Explainable Deep Learning in Healthcare: A Methodological Survey from an Attribution Viewcited by 15

50 most cited of 209 All 209 (JSON)