Unsupervised Deformable Registration for Multi-Modal Images via Disentangled Representations
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Abstract (arXiv)
We propose a fully unsupervised multi-modal deformable image registration method (UMDIR), which does not require any ground truth deformation fields or any aligned multi-modal image pairs during training. Multi-modal registration is a key problem in many medical image analysis applications. It is very challenging due to complicated and unknown relationships between different modalities. In this paper, we propose an unsupervised learning approach to reduce the multi-modal registration problem to a mono-modal one through image disentangling. In particular, we decompose images of both modalities into a common latent shape space and separate latent appearance spaces via an unsupervised multi-modal image-to-image translation approach. The proposed registration approach is then built on the factorized latent shape code, with the assumption that the intrinsic shape deformation existing in original image domain is preserved in this latent space. Specifically, two metrics have been proposed for training the proposed network: a latent similarity metric defined in the common shape space and a learningbased image similarity metric based on an adversarial loss. We examined different variations of our proposed approach and compared them with conventional state-of-the-art multi-modal registration methods. Results show that our proposed methods achieve competitive performance against other methods at substantially reduced computation time.
Key facts. Cited by 52 papers in the map (data through 7 Oct 2026). First posted on arXiv 22 Mar 2019.
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Citing papers per year: 2021: 14; 2022: 11; 2023: 9; 2024: 7; 2025: 7; 2026: 4.
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- 2021Breaking the Dilemma of Medical Image-to-image Translationcited by 82
- 2023A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyondcited by 55
- 2021Learning Disentangled Representations in the Imaging Domaincited by 46
- 2023A Robust and Interpretable Deep Learning Framework for Multi-modal Registration via Keypointscited by 25
- 2021Representation Disentanglement for Multi-modal brain MR Analysiscited by 22
- 2022Generative Myocardial Motion Tracking via Latent Space Exploration with Biomechanics-informed Priorcited by 22
- 2021FedDis: Disentangled Federated Learning for Unsupervised Brain Pathology Segmentationcited by 19
- 2022Multi-Modality Cardiac Image Computing: A Surveycited by 19
- 2023Anatomy-aware and acquisition-agnostic joint registration with SynthMorphcited by 19
- 2021Multi-scale Neural ODEs for 3D Medical Image Registrationcited by 18
- 2024multiGradICON: A Foundation Model for Multimodal Medical Image Registrationcited by 16
- 2022Unsupervised Multi-Modal Medical Image Registration via Discriminator-Free Image-to-Image Translationcited by 11
38 more
- 2021Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Studycited by 9
- 2022ContraReg: Contrastive Learning of Multi-modality Unsupervised Deformable Image Registrationcited by 9
- 2022Cross-Modality Image Registration using a Training-Time Privileged Third Modalitycited by 9
- 2023Cross-Modal Vertical Federated Learning for MRI Reconstructioncited by 9
- 2021Anatomy-guided Multimodal Registration by Learning Segmentation without Ground Truth: Application to Intraprocedural CBCT/MR Liver Segmentation and Registrationcited by 8
- 2022Cross-Modality Multi-Atlas Segmentation via Deep Registration and Label Fusioncited by 8
- 2022Deep Learning for Medical Image Registration: A Comprehensive Reviewcited by 8
- 2021GLOWin: A Flow-based Invertible Generative Framework for Learning Disentangled Feature Representations in Medical Imagescited by 6
- 2021Going Beyond Saliency Maps: Training Deep Models to Interpret Deep Modelscited by 5
- 2023Indescribable Multi-modal Spatial Evaluatorcited by 5
- 2023Conditional Deformable Image Registration with Spatially-Variant and Adaptive Regularizationcited by 5
- 2021Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlascited by 4
- 2021Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired imagescited by 4
- 2021MICS : Multi-steps, Inverse Consistency and Symmetric deep learning registration networkcited by 4
- 2023MetaMorph: Learning Metamorphic Image Transformation With Appearance Changescited by 4
- 2023Breaking Modality Disparity: Harmonized Representation for Infrared and Visible Image Registrationcited by 4
- 2022BInGo: Bayesian Intrinsic Groupwise Registration via Explicit Hierarchical Disentanglementcited by 3
- 2024Medical Image Registration and Its Application in Retinal Images: A Reviewcited by 3
- 2023Can representation learning for multimodal image registration be improved by supervision of intermediate layers?cited by 2
- 2024Boosting Medical Image Synthesis via Registration-guided Consistency and Disentanglement Learningcited by 2
- 2024CAR: Contrast-Agnostic Deformable Medical Image Registration with Contrast-Invariant Latent Regularizationcited by 2
- 2025From Traditional to Deep Learning Approaches in Whole Slide Image Registration: A Methodological Reviewcited by 2
- 2025AtlasMorph: Learning conditional deformable templates for brain MRIcited by 2
- 2021Unsupervised Multi-Modality Registration Network based on Spatially Encoded Gradient Informationcited by 1
- 2022Multi-modal unsupervised brain image registration using edge mapscited by 1
- 2022Unsupervised Image Registration Towards Enhancing Performance and Explainability in Cardiac And Brain Image Analysiscited by 1
- 2022Clinically Plausible Pathology-Anatomy Disentanglement in Patient Brain MRI with Structured Variational Priorscited by 1
- 2024Bayesian Unsupervised Disentanglement of Anatomy and Geometry for Deep Groupwise Image Registrationcited by 1
- 2024MambaReg: Mamba-Based Disentangled Convolutional Sparse Coding for Unsupervised Deformable Multi-Modal Image Registrationcited by 1
- 2025Intraoperative 2D/3D Registration via Spherical Similarity Learning and Differentiable Levenberg-Marquardt Optimizationcited by 1
- 2021Exploring Deep Registration Latent Spacescited by 0
- 2024Multimodal Deformable Image Registration for Long-COVID Analysis Based on Progressive Alignment and Multi-perspective Losscited by 0
- 2025Large Language Model Guided Progressive Feature Alignment for Multimodal UAV Object Detectioncited by 0
- 2025RealKeyMorph: Keypoints in Real-world Coordinates for Resolution-agnostic Image Registrationcited by 0
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolutioncited by 0
- 2025Plasticine: A Traceable Diffusion Model for Medical Image Translationcited by 0
- 2026Adaptive Conditional Contrast-Agnostic Deformable Image Registration with Uncertainty Estimationcited by 0
- 2026Adapting Frozen Mono-modal Backbones for Multi-modal Registration via Contrast-Agnostic Instance Optimizationcited by 0
50 most cited of 52 All 52 (JSON)
- 2026Patient-Agnostic Synthetic Pretraining for Efficient Patient-Specific Intraoperative 2D/3D Registration25 Jul 2026
- 2026Unsupervised Susceptibility Distortion Correction of EPI without Calibration Scans via Image Translation-Based Registration19 Jun 2026
- 2026Adapting Frozen Mono-modal Backbones for Multi-modal Registration via Contrast-Agnostic Instance Optimization27 Mar 2026
- 2026Adaptive Conditional Contrast-Agnostic Deformable Image Registration with Uncertainty Estimation9 Jan 2026
- 2025Plasticine: A Traceable Diffusion Model for Medical Image Translation20 Dec 2025
- 2025AtlasMorph: Learning conditional deformable templates for brain MRI17 Nov 2025
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolution29 Sep 2025
- 2025Intraoperative 2D/3D Registration via Spherical Similarity Learning and Differentiable Levenberg-Marquardt Optimization8 Sep 2025
- 2025RealKeyMorph: Keypoints in Real-world Coordinates for Resolution-agnostic Image Registration12 Jun 2025
- 2025Large Language Model Guided Progressive Feature Alignment for Multimodal UAV Object Detection10 Mar 2025
- 2025From Traditional to Deep Learning Approaches in Whole Slide Image Registration: A Methodological Review26 Feb 2025
- 2024MambaReg: Mamba-Based Disentangled Convolutional Sparse Coding for Unsupervised Deformable Multi-Modal Image Registration3 Nov 2024
38 more
- 2024CAR: Contrast-Agnostic Deformable Medical Image Registration with Contrast-Invariant Latent Regularization3 Aug 2024
- 2024multiGradICON: A Foundation Model for Multimodal Medical Image Registration1 Aug 2024
- 2024Boosting Medical Image Synthesis via Registration-guided Consistency and Disentanglement Learning10 Jul 2024
- 2024Multimodal Deformable Image Registration for Long-COVID Analysis Based on Progressive Alignment and Multi-perspective Loss21 Jun 2024
- 2024Medical Image Registration and Its Application in Retinal Images: A Review25 Mar 2024
- 2024Bayesian Unsupervised Disentanglement of Anatomy and Geometry for Deep Groupwise Image Registration4 Jan 2024
- 2023A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyond28 Jul 2023
- 2023Cross-Modal Vertical Federated Learning for MRI Reconstruction5 Jun 2023
- 2023A Robust and Interpretable Deep Learning Framework for Multi-modal Registration via Keypoints19 Apr 2023
- 2023Breaking Modality Disparity: Harmonized Representation for Infrared and Visible Image Registration12 Apr 2023
- 2023Conditional Deformable Image Registration with Spatially-Variant and Adaptive Regularization19 Mar 2023
- 2023MetaMorph: Learning Metamorphic Image Transformation With Appearance Changes8 Mar 2023
- 2023Can representation learning for multimodal image registration be improved by supervision of intermediate layers?1 Mar 2023
- 2023Indescribable Multi-modal Spatial Evaluator1 Mar 2023
- 2023Anatomy-aware and acquisition-agnostic joint registration with SynthMorph26 Jan 2023
- 2022Clinically Plausible Pathology-Anatomy Disentanglement in Patient Brain MRI with Structured Variational Priors15 Nov 2022
- 2022Multi-Modality Cardiac Image Computing: A Survey26 Aug 2022
- 2022Cross-Modality Image Registration using a Training-Time Privileged Third Modality26 Jul 2022
- 2022ContraReg: Contrastive Learning of Multi-modality Unsupervised Deformable Image Registration27 Jun 2022
- 2022Generative Myocardial Motion Tracking via Latent Space Exploration with Biomechanics-informed Prior8 Jun 2022
- 2022BInGo: Bayesian Intrinsic Groupwise Registration via Explicit Hierarchical Disentanglement6 Jun 2022
- 2022Unsupervised Multi-Modal Medical Image Registration via Discriminator-Free Image-to-Image Translation28 Apr 2022
- 2022Deep Learning for Medical Image Registration: A Comprehensive Review24 Apr 2022
- 2022Unsupervised Image Registration Towards Enhancing Performance and Explainability in Cardiac And Brain Image Analysis7 Mar 2022
- 2022Multi-modal unsupervised brain image registration using edge maps9 Feb 2022
- 2022Cross-Modality Multi-Atlas Segmentation via Deep Registration and Label Fusion4 Feb 2022
- 2021MICS : Multi-steps, Inverse Consistency and Symmetric deep learning registration network23 Nov 2021
- 2021Breaking the Dilemma of Medical Image-to-image Translation13 Oct 2021
- 2021Learning Disentangled Representations in the Imaging Domain26 Aug 2021
- 2021Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired images30 Jul 2021
- 2021Exploring Deep Registration Latent Spaces23 Jul 2021
- 2021Multi-scale Neural ODEs for 3D Medical Image Registration16 Jun 2021
- 2021Unsupervised Multi-Modality Registration Network based on Spatially Encoded Gradient Information16 May 2021
- 2021Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas30 Apr 2021
- 2021Anatomy-guided Multimodal Registration by Learning Segmentation without Ground Truth: Application to Intraprocedural CBCT/MR Liver Segmentation and Registration14 Apr 2021
- 2021Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Study30 Mar 2021
- 2021GLOWin: A Flow-based Invertible Generative Framework for Learning Disentangled Feature Representations in Medical Images19 Mar 2021
- 2021FedDis: Disentangled Federated Learning for Unsupervised Brain Pathology Segmentation5 Mar 2021
50 newest of 52 All 52 (JSON)
- 2021Breaking the Dilemma of Medical Image-to-image Translationcited by 82
- 2023A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyondcited by 55
- 2021Learning Disentangled Representations in the Imaging Domaincited by 46
- 2023A Robust and Interpretable Deep Learning Framework for Multi-modal Registration via Keypointscited by 25
- 2021Representation Disentanglement for Multi-modal brain MR Analysiscited by 22
- 2022Generative Myocardial Motion Tracking via Latent Space Exploration with Biomechanics-informed Priorcited by 22
- 2021FedDis: Disentangled Federated Learning for Unsupervised Brain Pathology Segmentationcited by 19
- 2022Multi-Modality Cardiac Image Computing: A Surveycited by 19
- 2023Anatomy-aware and acquisition-agnostic joint registration with SynthMorphcited by 19
- 2021Multi-scale Neural ODEs for 3D Medical Image Registrationcited by 18
- 2024multiGradICON: A Foundation Model for Multimodal Medical Image Registrationcited by 16
- 2022Unsupervised Multi-Modal Medical Image Registration via Discriminator-Free Image-to-Image Translationcited by 11
12 most cited of 50 All 50 (JSON)
- 2026Patient-Agnostic Synthetic Pretraining for Efficient Patient-Specific Intraoperative 2D/3D Registration25 Jul 2026
- 2026Unsupervised Susceptibility Distortion Correction of EPI without Calibration Scans via Image Translation-Based Registration19 Jun 2026
- 2026Adapting Frozen Mono-modal Backbones for Multi-modal Registration via Contrast-Agnostic Instance Optimization27 Mar 2026
- 2026Adaptive Conditional Contrast-Agnostic Deformable Image Registration with Uncertainty Estimation9 Jan 2026
- 2025AtlasMorph: Learning conditional deformable templates for brain MRI17 Nov 2025
- 2025Anatomy-DT: A Cross-Diffusion Digital Twin for Anatomical Evolution29 Sep 2025
- 2025Intraoperative 2D/3D Registration via Spherical Similarity Learning and Differentiable Levenberg-Marquardt Optimization8 Sep 2025
- 2025RealKeyMorph: Keypoints in Real-world Coordinates for Resolution-agnostic Image Registration12 Jun 2025
- 2025Large Language Model Guided Progressive Feature Alignment for Multimodal UAV Object Detection10 Mar 2025
- 2025From Traditional to Deep Learning Approaches in Whole Slide Image Registration: A Methodological Review26 Feb 2025
- 2024CAR: Contrast-Agnostic Deformable Medical Image Registration with Contrast-Invariant Latent Regularization3 Aug 2024
- 2024multiGradICON: A Foundation Model for Multimodal Medical Image Registration1 Aug 2024
12 newest of 50 All 50 (JSON)