OptShrink: An algorithm for improved low-rank signal matrix denoising by optimal, data-driven singular value shrinkage
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Abstract (arXiv)
The truncated singular value decomposition (SVD) of the measurement matrix is the optimal solution to the_representation_ problem of how to best approximate a noisy measurement matrix using a low-rank matrix. Here, we consider the (unobservable)_denoising_ problem of how to best approximate a low-rank signal matrix buried in noise by optimal (re)weighting of the singular vectors of the measurement matrix. We exploit recent results from random matrix theory to exactly characterize the large matrix limit of the optimal weighting coefficients and show that they can be computed directly from data for a large class of noise models that includes the i.i.d. Gaussian noise case. Our analysis brings into sharp focus the shrinkage-and-thresholding form of the optimal weights, the non-convex nature of the associated shrinkage function (on the singular values) and explains why matrix regularization via singular value thresholding with convex penalty functions (such as the nuclear norm) will always be suboptimal. We validate our theoretical predictions with numerical simulations, develop an implementable algorithm (OptShrink) that realizes the predicted performance gains and show how our methods can be used to improve estimation in the setting where the measured matrix has missing entries.
Key facts. Cited by 14 papers in the map (data through 7 Oct 2026). First posted on arXiv 25 Jun 2013.
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Citing papers per year: 2022: 1; 2023: 3; 2024: 4; 2025: 4; 2026: 2.
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- 2024Nuclear Norm Regularization for Deep Learningcited by 11
- 2023Deflated HeteroPCA: Overcoming the curse of ill-conditioning in heteroskedastic PCAcited by 7
- 2023Is your data alignable? Principled and interpretable alignability testing and integration of single-cell datacited by 6
- 2024Matrix Denoising with Doubly Heteroscedastic Noise: Fundamental Limits and Optimal Spectral Methodscited by 5
- 2025FLoRIST: Singular Value Thresholding for Efficient and Accurate Federated Fine-Tuning of Large Language Modelscited by 4
- 2022Capturing the Denoising Effect of PCA via Compression Ratiocited by 3
- 2024Generalization for Least Squares Regression With Simple Spiked Covariancescited by 2
- 2026eOptShrinkQ: Near-Lossless KV Cache Compression Through Optimal Spectral Denoising and Quantizationcited by 2
- 2024Design a Metric Robust to Complicated High Dimensional Noise for Efficient Manifold Denoisingcited by 1
- 2025Random Matrix Theory-guided sparse PCA for single-cell RNA-seq datacited by 1
- 2025Orthogonal Approximate Message Passing with Optimal Spectral Initializations for Rectangular Spiked Matrix Modelscited by 1
- 2023On the Noise Sensitivity of the Randomized SVDcited by 0
- 2026eOptShrinkQ: Near-Lossless KV Cache Compression Through Optimal Spectral Denoising and Quantization6 Apr 2026
- 2026Orthogonal Approximate Message Passing Algorithms for Rectangular Spiked Matrix Models with Rotationally Invariant Noise3 Feb 2026
- 2025Orthogonal Approximate Message Passing with Optimal Spectral Initializations for Rectangular Spiked Matrix Models22 Dec 2025
- 2025Whitening Spherical Gaussian Mixtures in the Large-Dimensional Regime22 Sep 2025
- 2025Random Matrix Theory-guided sparse PCA for single-cell RNA-seq data18 Sep 2025
- 2025FLoRIST: Singular Value Thresholding for Efficient and Accurate Federated Fine-Tuning of Large Language Models10 Jun 2025
- 2024Generalization for Least Squares Regression With Simple Spiked Covariances17 Oct 2024
- 2024Nuclear Norm Regularization for Deep Learning23 May 2024
- 2024Matrix Denoising with Doubly Heteroscedastic Noise: Fundamental Limits and Optimal Spectral Methods22 May 2024
- 2024Design a Metric Robust to Complicated High Dimensional Noise for Efficient Manifold Denoising8 Jan 2024
- 2023Is your data alignable? Principled and interpretable alignability testing and integration of single-cell data3 Aug 2023
- 2023On the Noise Sensitivity of the Randomized SVD27 May 2023
2 more
- 2024Nuclear Norm Regularization for Deep Learningcited by 11
- 2023Deflated HeteroPCA: Overcoming the curse of ill-conditioning in heteroskedastic PCAcited by 7
- 2023Is your data alignable? Principled and interpretable alignability testing and integration of single-cell datacited by 6
- 2024Matrix Denoising with Doubly Heteroscedastic Noise: Fundamental Limits and Optimal Spectral Methodscited by 5
- 2025FLoRIST: Singular Value Thresholding for Efficient and Accurate Federated Fine-Tuning of Large Language Modelscited by 4
- 2022Capturing the Denoising Effect of PCA via Compression Ratiocited by 3
- 2024Generalization for Least Squares Regression With Simple Spiked Covariancescited by 2
- 2024Design a Metric Robust to Complicated High Dimensional Noise for Efficient Manifold Denoisingcited by 1
- 2025Random Matrix Theory-guided sparse PCA for single-cell RNA-seq datacited by 1
- 2025Orthogonal Approximate Message Passing with Optimal Spectral Initializations for Rectangular Spiked Matrix Modelscited by 1
- 2023On the Noise Sensitivity of the Randomized SVDcited by 0
- 2025Whitening Spherical Gaussian Mixtures in the Large-Dimensional Regimecited by 0
12 most cited of 13 All 13 (JSON)
- 2026Orthogonal Approximate Message Passing Algorithms for Rectangular Spiked Matrix Models with Rotationally Invariant Noise3 Feb 2026
- 2025Orthogonal Approximate Message Passing with Optimal Spectral Initializations for Rectangular Spiked Matrix Models22 Dec 2025
- 2025Whitening Spherical Gaussian Mixtures in the Large-Dimensional Regime22 Sep 2025
- 2025Random Matrix Theory-guided sparse PCA for single-cell RNA-seq data18 Sep 2025
- 2025FLoRIST: Singular Value Thresholding for Efficient and Accurate Federated Fine-Tuning of Large Language Models10 Jun 2025
- 2024Generalization for Least Squares Regression With Simple Spiked Covariances17 Oct 2024
- 2024Nuclear Norm Regularization for Deep Learning23 May 2024
- 2024Matrix Denoising with Doubly Heteroscedastic Noise: Fundamental Limits and Optimal Spectral Methods22 May 2024
- 2024Design a Metric Robust to Complicated High Dimensional Noise for Efficient Manifold Denoising8 Jan 2024
- 2023Is your data alignable? Principled and interpretable alignability testing and integration of single-cell data3 Aug 2023
- 2023On the Noise Sensitivity of the Randomized SVD27 May 2023
- 2023Deflated HeteroPCA: Overcoming the curse of ill-conditioning in heteroskedastic PCA10 Mar 2023
12 newest of 13 All 13 (JSON)