# Knowledge Graphs as Files: An Agent Harness Where Tool Creation and Tool Use Co-Evolve

arXiv: https://arxiv.org/abs/2610.18616 · HTML: https://mlsanity.com/paper/2610.18616/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in Web, search, and research agents, one of 16 directions in LLM agents and tool use.
- Builds on 41 of its 79 references that are in the map.
- First posted on arXiv 13 Oct 2026.

## Placed in

- LLM agents and tool use / [Web, search, and research agents](https://mlsanity.com/agents/web-search-and-research-agents/)

## Builds on (most cited first, 30 of 41)

- [ReAct: Synergizing Reasoning and Acting in Language Models](https://mlsanity.com/paper/2210.03629/) (2022)
- [Open Graph Benchmark: Datasets for Machine Learning on Graphs](https://mlsanity.com/paper/2005.00687/) (2020)
- [Teaching Large Language Models to Self-Debug](https://mlsanity.com/paper/2304.05128/) (2023)
- [Image-based Recommendations on Styles and Substitutes](https://mlsanity.com/paper/1506.04757/) (2015)
- [Unifying Large Language Models and Knowledge Graphs: A Roadmap](https://mlsanity.com/paper/2306.08302/) (2023)
- [Ups and Downs: Modeling the Visual Evolution of Fashion Trends with One-Class Collaborative Filtering](https://mlsanity.com/paper/1602.01585/) (2016)
- [ColBERTv2: Effective and Efficient Retrieval via Lightweight Late Interaction](https://mlsanity.com/paper/2112.01488/) (2021)
- [The Web as a Knowledge-base for Answering Complex Questions](https://mlsanity.com/paper/1803.06643/) (2018)
- [StructGPT: A General Framework for Large Language Model to Reason over Structured Data](https://mlsanity.com/paper/2305.09645/) (2023)
- [Large Language Models as Tool Makers](https://mlsanity.com/paper/2305.17126/) (2023)
- [Think-on-Graph: Deep and Responsible Reasoning of Large Language Model on Knowledge Graph](https://mlsanity.com/paper/2307.07697/) (2023)
- [Generative Representational Instruction Tuning](https://mlsanity.com/paper/2402.09906/) (2024)
- [Beyond I.I.D.: Three Levels of Generalization for Question Answering on Knowledge Bases](https://mlsanity.com/paper/2011.07743/) (2020)
- [CRAFT: Customizing LLMs by Creating and Retrieving from Specialized Toolsets](https://mlsanity.com/paper/2309.17428/) (2023)
- [Graph Chain-of-Thought: Augmenting Large Language Models by Reasoning on Graphs](https://mlsanity.com/paper/2404.07103/) (2024)
- [Neural Symbolic Machines: Learning Semantic Parsers on Freebase with Weak Supervision](https://mlsanity.com/paper/1611.00020/) (2016)
- [UniKGQA: Unified Retrieval and Reasoning for Solving Multi-hop Question Answering Over Knowledge Graph](https://mlsanity.com/paper/2212.00959/) (2022)
- [Live-SWE-agent: Can Software Engineering Agents Self-Evolve on the Fly?](https://mlsanity.com/paper/2511.13646/) (2025)
- [KG-Agent: An Efficient Autonomous Agent Framework for Complex Reasoning over Knowledge Graph](https://mlsanity.com/paper/2402.11163/) (2024)
- [PyVision: Agentic Vision with Dynamic Tooling](https://mlsanity.com/paper/2507.07998/) (2025)
- [KQA Pro: A Dataset with Explicit Compositional Programs for Complex Question Answering over Knowledge Base](https://mlsanity.com/paper/2007.03875/) (2020)
- [Plan-on-Graph: Self-Correcting Adaptive Planning of Large Language Model on Knowledge Graphs](https://mlsanity.com/paper/2410.23875/) (2024)
- [TroVE: Inducing Verifiable and Efficient Toolboxes for Solving Programmatic Tasks](https://mlsanity.com/paper/2401.12869/) (2024)
- [AvaTaR: Optimizing LLM Agents for Tool Usage via Contrastive Reasoning](https://mlsanity.com/paper/2406.11200/) (2024)
- [STaRK: Benchmarking LLM Retrieval on Textual and Relational Knowledge Bases](https://mlsanity.com/paper/2404.13207/) (2024)
- [Beyond Semantic Similarity: Rethinking Retrieval for Agentic Search via Direct Corpus Interaction](https://mlsanity.com/paper/2605.05242/) (2026)
- [Addressing Complex and Subjective Product-Related Queries with Customer Reviews](https://mlsanity.com/paper/1512.06863/) (2015)
- [HybGRAG: Hybrid Retrieval-Augmented Generation on Textual and Relational Knowledge Bases](https://mlsanity.com/paper/2412.16311/) (2024)
- [Knowledge-Aware Query Expansion with Large Language Models for Textual and Relational Retrieval](https://mlsanity.com/paper/2410.13765/) (2024)
- [Is Grep All You Need? How Agent Harnesses Reshape Agentic Search](https://mlsanity.com/paper/2605.15184/) (2026)

## Abstract (arXiv)

Searching text-rich knowledge graphs requires following relations while examining textual evidence. Predefined graph interfaces constrain what evidence agents can access, even when they write code to combine tool calls or process retrieved subgraphs. We propose direct knowledge graph interaction (DKGI), a harness in which language model agents create graph access tools directly over complete node and edge files. The agent writes Python code to follow relations, combine node sets, and select textual evidence, interleaving execution with shell search and file inspection. This lets agents process large node sets in bulk while returning selected text for the model to assess. Execution feedback guides tool creation and revision, while the evolving tools determine what evidence the agent gathers next. On benchmark datasets spanning three domains, training-free DKGI exceeds the strongest published baseline by at least 6.7 Hit@1 points on every graph, even with a minimal harness. Controlled ablations show the benefits of multi-turn programming over shell-only access and predefined graph tools, while trajectories show agents revising code to extend searches or address errors. These findings highlight the value of allowing tool creation and tool use to co-evolve during graph search. Our code and data are available at https://github.com/leopoldwhite/DKGI.