# On the Effectiveness of Kernel-Level Evidence for Agent Security

arXiv: https://arxiv.org/abs/2609.28915 · HTML: https://mlsanity.com/paper/2609.28915/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in Agent threats, guardrails and governance, one of 16 directions in LLM agents and tool use.
- Builds on 36 of its 68 references that are in the map.
- First posted on arXiv 24 Sep 2026.

## Placed in

- LLM agents and tool use / [Agent threats, guardrails and governance](https://mlsanity.com/agents/agent-threats-guardrails-and-governance/)

## Builds on (most cited first, 30 of 36)

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- [Identifying the Risks of LM Agents with an LM-Emulated Sandbox](https://mlsanity.com/paper/2309.15817/) (2023)
- [AgentHarm: A Benchmark for Measuring Harmfulness of LLM Agents](https://mlsanity.com/paper/2410.09024/) (2024)
- [Agent Security Bench (ASB): Formalizing and Benchmarking Attacks and Defenses in LLM-based Agents](https://mlsanity.com/paper/2410.02644/) (2024)
- [Defeating Prompt Injections by Design](https://mlsanity.com/paper/2503.18813/) (2025)
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- [Set Transformer: A Framework for Attention-based Permutation-Invariant Neural Networks](https://mlsanity.com/paper/1810.00825/) (2018)
- [RedCode: Risky Code Execution and Generation Benchmark for Code Agents](https://mlsanity.com/paper/2411.07781/) (2024)
- [MCPTox: A Benchmark for Tool Poisoning Attack on Real-World MCP Servers](https://mlsanity.com/paper/2508.14925/) (2025)
- [UNICORN: Runtime Provenance-Based Detector for Advanced Persistent Threats](https://mlsanity.com/paper/2001.01525/) (2020)
- [HOLMES: Real-time APT Detection through Correlation of Suspicious Information Flows](https://mlsanity.com/paper/1810.01594/) (2018)
- [MCP Security Bench (MSB): Benchmarking Attacks Against Model Context Protocol in LLM Agents](https://mlsanity.com/paper/2510.15994/) (2025)
- [Kairos: Practical Intrusion Detection and Investigation using Whole-system Provenance](https://mlsanity.com/paper/2308.05034/) (2023)
- [POIROT: Aligning Attack Behavior with Kernel Audit Records for Cyber Threat Hunting](https://mlsanity.com/paper/1910.00056/) (2019)
- [AgentBound: Securing Execution Boundaries of AI Agents](https://mlsanity.com/paper/2510.21236/) (2025)
- [AgentSight: System-Level Observability for AI Agents Using eBPF](https://mlsanity.com/paper/2508.02736/) (2025)
- [MCP-Guard: A Multi-Stage Defense-in-Depth Framework for Securing Model Context Protocol in Agentic AI](https://mlsanity.com/paper/2508.10991/) (2025)
- [Quantifying Frontier LLM Capabilities for Container Sandbox Escape](https://mlsanity.com/paper/2603.02277/) (2026)
- [Agent-Sentry: Bounding LLM Agents via Execution Provenance](https://mlsanity.com/paper/2603.22868/) (2026)
- [Aligning Provenance with Authorization: A Dual-Graph Defense for LLM Agents](https://mlsanity.com/paper/2605.26497/) (2026)
- [ToolPRMBench: Evaluating and Advancing Process Reward Models for Tool-using Agents](https://mlsanity.com/paper/2601.12294/) (2026)
- [LSTM-Based System-Call Language Modeling and Robust Ensemble Method for Designing Host-Based Intrusion Detection Systems](https://mlsanity.com/paper/1611.01726/) (2016)

## Abstract (arXiv)

LLM agents are deployed into infrastructure that grants them broad host authority, yet existing agent-security benchmarks and defenses operate almost exclusively at the application telemetry layer: the served tool manifest, the user prompt, and the model's messages. Some threats, however, smuggle malicious instructions and actions past the application boundary, leaving them invisible to that layer. In this work, we bridge that gap by pairing application-level agent telemetry with kernel-level syscall traces to present the first paired-evidence characterization of kernel-level versus application-layer signal for agent security. To quantify the value of the enhanced telemetry, we introduce Agent Cross-Layer Evidence (ACE), a paired-session corpus of 4,047 sessions and 17 threat models spanning six delivery-vector families and 14 of the 25 OWASP LLM and agentic threat categories, organized into 12 attack mechanics with per-mechanic characterization of where the most discriminative evidence lies. Across four distinct detector families, we find that kernel evidence is discriminative on its own and that composing it with application-layer evidence generally outperforms either single-layer view, revealing complementary signals that single-layer analyses can miss. We further demonstrate generalization to unseen attack families and transfer to an alternate agent runtime. Together, these findings establish the value of cross-layer evidence for agent security.