# Latent Commonality Expectation-Maximisation for Box-supervised Tree Crown Instance Segmentation

arXiv: https://arxiv.org/abs/2609.26549 · HTML: https://mlsanity.com/paper/2609.26549/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 37 of its 82 references that are in the map.
- First posted on arXiv 22 Sep 2026.

## Builds on (most cited first, 30 of 37)

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- [DINOv2: Learning Robust Visual Features without Supervision](https://mlsanity.com/paper/2304.07193/) (2023)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Emerging Properties in Self-Supervised Vision Transformers](https://mlsanity.com/paper/2104.14294/) (2021)
- [You Only Look Once: Unified, Real-Time Object Detection](https://mlsanity.com/paper/1506.02640/) (2015)
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- [DINO: DETR with Improved DeNoising Anchor Boxes for End-to-End Object Detection](https://mlsanity.com/paper/2203.03605/) (2022)
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- [Cell Detection with Star-convex Polygons](https://mlsanity.com/paper/1806.03535/) (2018)
- [RSPrompter: Learning to Prompt for Remote Sensing Instance Segmentation based on Visual Foundation Model](https://mlsanity.com/paper/2306.16269/) (2023)
- [BoxInst: High-Performance Instance Segmentation with Box Annotations](https://mlsanity.com/paper/2012.02310/) (2020)
- [DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision](https://mlsanity.com/paper/2105.06464/) (2021)
- [BoxTeacher: Exploring High-Quality Pseudo Labels for Weakly Supervised Instance Segmentation](https://mlsanity.com/paper/2210.05174/) (2022)
- [Box2Mask: Box-supervised Instance Segmentation via Level-set Evolution](https://mlsanity.com/paper/2212.01579/) (2022)
- [Optimizing the Trade-off between Single-Stage and Two-Stage Object Detectors using Image Difficulty Prediction](https://mlsanity.com/paper/1803.08707/) (2018)

## Abstract (arXiv)

Individual tree crown segmentation from aerial imagery underpins tree-level carbon accounting, biodiversity, and restoration monitoring at landscape scale. However, existing models are predominantly trained on dense canopy forest imagery and degrade in savannah and drylands, where tree crowns are sparse, of variable appearance, and underrepresented in annotated benchmarks. These models also typically depend on costly polygon annotations. We introduce LACE (LAtent Commonality Expectation-maximisation), a box-supervised instance segmentation model, evaluated on 0.1 m/px aerial RGB tree crown imagery. LACE uses a frozen DINOv3-web ViT-L/16 encoder, applied at four spatial offsets and interlaced into a denser feature grid, with a lightweight CenterNet-style detection head trained solely on bounding boxes. We use expectation-maximisation to separate recurring appearance, the "treeness", within bounding boxes from surroundings. On the OAM-TCD benchmark test set, LACE reaches a mask AP50 of 0.663 ± 0.001 (3 seeds) trained on 900 box-annotated images and without mask annotations, above the 0.626 scored by Restor's released mask-supervised Mask R-CNN, which was trained on the full ~4.2k image set. On a sparse-canopy holdout set, mask AP50 rises to 0.691 versus 0.612 for Detectree2, a mask-supervised baseline. On NeonTreeEvaluation, using the official evaluation code, LACE reaches 0.728 ± 0.003 F1@0.4 (5 seeds) from 23,424 hand-annotated RGB boxes alone, matching the authors' DeepForest model's published 0.719, using under 0.1% of its training annotations and none of its LiDAR-derived 30M-crown pretraining set. By leveraging frozen self-supervised features, LACE matches or surpasses fully-supervised specialist baselines from boxes alone, removing the need for polygon annotation in tree crown instance segmentation for sparse-canopy environments where labelled data is scarce.