# Comparing Latent Concept Formation in State Space Models and Transformers via Sparse Autoencoders

arXiv: https://arxiv.org/abs/2609.24440 · HTML: https://mlsanity.com/paper/2609.24440/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in Core SSM architectures for language, one of 10 directions in State-space sequence models (S4, Mamba).
- Builds on 9 of its 14 references that are in the map.
- First posted on arXiv 21 Sep 2026.

## Placed in

- State-space sequence models (S4, Mamba) / [Core SSM architectures for language](https://mlsanity.com/ssm/core-ssm-architectures-for-language/)
- Mechanistic interpretability / [Circuits and mechanistic analysis](https://mlsanity.com/mechinterp/circuits-and-mechanistic-analysis/)

## Builds on (most cited first, 9 of 9)

- [Mamba: Linear-Time Sequence Modeling with Selective State Spaces](https://mlsanity.com/paper/2312.00752/) (2023)
- [Locating and Editing Factual Associations in GPT](https://mlsanity.com/paper/2202.05262/) (2022)
- [Pythia: A Suite for Analyzing Large Language Models Across Training and Scaling](https://mlsanity.com/paper/2304.01373/) (2023)
- [Similarity of Neural Network Representations Revisited](https://mlsanity.com/paper/1905.00414/) (2019)
- [Sparse Autoencoders Find Highly Interpretable Features in Language Models](https://mlsanity.com/paper/2309.08600/) (2023)
- [Toy Models of Superposition](https://mlsanity.com/paper/2209.10652/) (2022)
- [GPT-NeoX-20B: An Open-Source Autoregressive Language Model](https://mlsanity.com/paper/2204.06745/) (2022)
- [The Platonic Representation Hypothesis](https://mlsanity.com/paper/2405.07987/) (2024)
- [Towards Universality: Studying Mechanistic Similarity Across Language Model Architectures](https://mlsanity.com/paper/2410.06672/) (2024)

## Abstract (arXiv)

The quadratic scaling of Transformer self-attention has driven the adoption of sub-quadratic Selective State Space Models (SSMs) like Mamba, which compress past context into a fixed-size recurrent hidden state. This strict informational bottleneck raises a foundational question for mechanistic interpretability: do SSMs and Transformers learn fundamentally distinct latent representations? In this work, we employ Sparse Autoencoders (SAEs) to conduct a large-scale, feature-level correspondence analysis between Mamba-130m and Pythia-70m over a 10-million token corpus. Contrary to hypotheses predicting widespread architectural divergence, we find no evidence of systematic representational divergence between architectures: across the observed Jaccard distribution, 99.98% of Mamba features cluster toward the upper alignment boundary, providing preliminary feature-level support for the Universality Hypothesis. We further identify and qualitatively characterize this microscopic fraction (0.02%) of diverging features, finding patterns consistent with the hypothesis that the recurrent bottleneck selectively limits the parsing of rigid syntax rather than broad semantic ontology. We demonstrate that while Pythia's unconstrained attention permits the monosemantic decomposition of distinct formatting edge-cases, Mamba is forced to compress unrelated syntactical anomalies into polysemantic "junk drawer" neurons to preserve state capacity. Collectively, these results suggest that architectural routing mechanisms may have negligible impact on core semantic understanding, with representational divergence confined to extreme structural margins.