# Does Deeper Reasoning Compromise Alignment? Revealing and Mitigating of Alignment Collapse in Large Reasoning Models

arXiv: https://arxiv.org/abs/2609.08186 · HTML: https://mlsanity.com/paper/2609.08186/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in Reasoning for agents, planning and code, one of 17 directions in LLM reasoning.
- Builds on 10 of its 36 references that are in the map.
- First posted on arXiv 8 Sep 2026.

## Placed in

- LLM reasoning / [Reasoning for agents, planning and code](https://mlsanity.com/lr/reasoning-for-agents-planning-and-code/)
- LLM safety and security / [Safety alignment, refusal and guardrails](https://mlsanity.com/safety/safety-alignment-refusal-and-guardrails/)

## Builds on (most cited first, 10 of 10)

- [Training language models to follow instructions with human feedback](https://mlsanity.com/paper/2203.02155/) (2022)
- [The Llama 3 Herd of Models](https://mlsanity.com/paper/2407.21783/) (2024)
- [Llama 2: Open Foundation and Fine-Tuned Chat Models](https://mlsanity.com/paper/2307.09288/) (2023)
- [Qwen3 Technical Report](https://mlsanity.com/paper/2505.09388/) (2025)
- [DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning](https://mlsanity.com/paper/2501.12948/) (2025)
- [Universal and Transferable Adversarial Attacks on Aligned Language Models](https://mlsanity.com/paper/2307.15043/) (2023)
- [Jailbreaking Black Box Large Language Models in Twenty Queries](https://mlsanity.com/paper/2310.08419/) (2023)
- [OpenAI o1 System Card](https://mlsanity.com/paper/2412.16720/) (2024)
- [H-CoT: Hijacking the Chain-of-Thought Safety Reasoning Mechanism to Jailbreak Large Reasoning Models, Including OpenAI o1/o3, DeepSeek-R1, and Gemini 2.0 Flash Thinking](https://mlsanity.com/paper/2502.12893/) (2025)
- [HyperAdaLoRA: Accelerating LoRA Rank Allocation During Training via Hypernetworks without Sacrificing Performance](https://mlsanity.com/paper/2510.02630/) (2025)

## Abstract (arXiv)

The emergence of Chain-of-Thought (CoT) has established a robust foundation for Large Reasoning Models (LRMs). While deep reasoning is widely believed to enhance safety alignment, the stability of alignment mechanisms under extended reasoning remains underexplored. This paper challenges the prevailing view by revealing a critical vulnerability: Deep Reasoning May Induce Alignment Collapse. To rigorously quantify this phenomenon, we propose the Alignment Loss Rate (ALR) metric. Our experiments demonstrate that as reasoning depth increases, ALR rises significantly, indicating a severe degradation in model robustness against external perturbations. Capitalizing on this instability, a novel jailbreaking paradigm, Reasoning Trap (RT), is proposed. RT induces the model into extended reasoning to amplify the impact of adversarial attacks, leading to a sharp decline in safety capabilities. To elucidate the mechanism behind this collapse, we identify Attention Dilution as the root cause, arising from the competition for attention between the extended reasoning process and the original input. To mitigate this, Reasoning Residual Alignment (RRA), a lightweight defense strategy that dynamically re-emphasizes the input via residual connections integrated with the reasoning process.