# PaperCompiler: Faithful Paper-to-Code Generation via Repository-Level Specification Compilation

arXiv: https://arxiv.org/abs/2609.02272 · HTML: https://mlsanity.com/paper/2609.02272/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 15 of its 23 references that are in the map.
- First posted on arXiv 2 Sep 2026.

## Builds on (most cited first, 15 of 15)

- [Program Synthesis with Large Language Models](https://mlsanity.com/paper/2108.07732/) (2021)
- [SWE-bench: Can Language Models Resolve Real-World GitHub Issues?](https://mlsanity.com/paper/2310.06770/) (2023)
- [LiveCodeBench: Holistic and Contamination Free Evaluation of Large Language Models for Code](https://mlsanity.com/paper/2403.07974/) (2024)
- [SWE-agent: Agent-Computer Interfaces Enable Automated Software Engineering](https://mlsanity.com/paper/2405.15793/) (2024)
- [RepoCoder: Repository-Level Code Completion Through Iterative Retrieval and Generation](https://mlsanity.com/paper/2303.12570/) (2023)
- [RepoBench: Benchmarking Repository-Level Code Auto-Completion Systems](https://mlsanity.com/paper/2306.03091/) (2023)
- [PaperBench: Evaluating AI's Ability to Replicate AI Research](https://mlsanity.com/paper/2504.01848/) (2025)
- [CrossCodeEval: A Diverse and Multilingual Benchmark for Cross-File Code Completion](https://mlsanity.com/paper/2310.11248/) (2023)
- [RE-Bench: Evaluating frontier AI R&D capabilities of language model agents against human experts](https://mlsanity.com/paper/2411.15114/) (2024)
- [CodePlan: Repository-level Coding using LLMs and Planning](https://mlsanity.com/paper/2309.12499/) (2023)
- [Paper2Code: Automating Code Generation from Scientific Papers in Machine Learning](https://mlsanity.com/paper/2504.17192/) (2025)
- [ML-Bench: Evaluating Large Language Models and Agents for Machine Learning Tasks on Repository-Level Code](https://mlsanity.com/paper/2311.09835/) (2023)
- [RepoFusion: Training Code Models to Understand Your Repository](https://mlsanity.com/paper/2306.10998/) (2023)
- [AutoReproduce: Automatic AI Experiment Reproduction with Paper Lineage](https://mlsanity.com/paper/2505.20662/) (2025)
- [HiRAS: A Hierarchical Multi-Agent Framework for Paper-to-Code Generation and Execution](https://mlsanity.com/paper/2604.17745/) (2026)

## Abstract (arXiv)

Faithfully translating research papers into repository-level implementations remains challenging because papers often describe methods at a high level, leave implementation assumptions implicit, and require generated repositories to preserve method logic, evaluation protocols, and cross-file consistency. Despite recent advances in paper-to-code agents, their intermediate outputs are often presented as free-form plans or summaries that downstream coding agents may ignore, reinterpret, or compress, leading to algorithmic simplification and inconsistent repository structure. To address these challenges, we introduce PaperCompiler, a paper-to-code generation framework that compiles paper-grounded evidence into explicit repository-level implementation specifications. PaperCompiler grounds implementation-relevant evidence while preserving source provenance and distinguishing paper-supported, inferred, externally delegated, and unresolved information. The resulting specifications encode non-degradation requirements, ownership assignments, cross-file dependencies, and file-level constraints. Repository generation proceeds under these compiled specifications while retaining flexibility over local engineering choices not fixed by the paper. PaperCompiler outperforms strong baselines on Paper2CodeBench, achieving a 13.8% relative improvement in reference-based fidelity (from 3.64 to 4.15) and reducing high-severity evaluator critiques (from 13.2% to 6.1%).