# Not All Tokens Are Equal: Region-Aware Consistency Repair of Backdoors in MLLMs

arXiv: https://arxiv.org/abs/2608.24354 · HTML: https://mlsanity.com/paper/2608.24354/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in Backdoor and data poisoning attacks, one of 12 directions in LLM safety and security.
- Builds on 47 of its 60 references that are in the map.
- First posted on arXiv 25 Aug 2026.

## Placed in

- LLM safety and security / [Backdoor and data poisoning attacks](https://mlsanity.com/safety/backdoor-and-data-poisoning-attacks/)

## Builds on (most cited first, 30 of 47)

- [Microsoft COCO: Common Objects in Context](https://mlsanity.com/paper/1405.0312/) (2014)
- [LoRA: Low-Rank Adaptation of Large Language Models](https://mlsanity.com/paper/2106.09685/) (2021)
- [Visual Instruction Tuning](https://mlsanity.com/paper/2304.08485/) (2023)
- [Towards Deep Learning Models Resistant to Adversarial Attacks](https://mlsanity.com/paper/1706.06083/) (2017)
- [BLIP-2: Bootstrapping Language-Image Pre-training with Frozen Image Encoders and Large Language Models](https://mlsanity.com/paper/2301.12597/) (2023)
- [Qwen2.5-VL Technical Report](https://mlsanity.com/paper/2502.13923/) (2025)
- [Improved Baselines with Visual Instruction Tuning](https://mlsanity.com/paper/2310.03744/) (2023)
- [Flamingo: a Visual Language Model for Few-Shot Learning](https://mlsanity.com/paper/2204.14198/) (2022)
- [Qwen2-VL: Enhancing Vision-Language Model's Perception of the World at Any Resolution](https://mlsanity.com/paper/2409.12191/) (2024)
- [LAION-5B: An open large-scale dataset for training next generation image-text models](https://mlsanity.com/paper/2210.08402/) (2022)
- [QLoRA: Efficient Finetuning of Quantized LLMs](https://mlsanity.com/paper/2305.14314/) (2023)
- [InstructBLIP: Towards General-purpose Vision-Language Models with Instruction Tuning](https://mlsanity.com/paper/2305.06500/) (2023)
- [Making the V in VQA Matter: Elevating the Role of Image Understanding in Visual Question Answering](https://mlsanity.com/paper/1612.00837/) (2016)
- [VQA: Visual Question Answering](https://mlsanity.com/paper/1505.00468/) (2015)
- [MMBench: Is Your Multi-modal Model an All-around Player?](https://mlsanity.com/paper/2307.06281/) (2023)
- [CIDEr: Consensus-based Image Description Evaluation](https://mlsanity.com/paper/1411.5726/) (2014)
- [Similarity of Neural Network Representations Revisited](https://mlsanity.com/paper/1905.00414/) (2019)
- [ChartQA: A Benchmark for Question Answering about Charts with Visual and Logical Reasoning](https://mlsanity.com/paper/2203.10244/) (2022)
- [LlamaFactory: Unified Efficient Fine-Tuning of 100+ Language Models](https://mlsanity.com/paper/2403.13372/) (2024)
- [Microsoft COCO Captions: Data Collection and Evaluation Server](https://mlsanity.com/paper/1504.00325/) (2015)
- [DocVQA: A Dataset for VQA on Document Images](https://mlsanity.com/paper/2007.00398/) (2020)
- [Mind2Web: Towards a Generalist Agent for the Web](https://mlsanity.com/paper/2306.06070/) (2023)
- [BadNets: Identifying Vulnerabilities in the Machine Learning Model Supply Chain](https://mlsanity.com/paper/1708.06733/) (2017)
- [Targeted Backdoor Attacks on Deep Learning Systems Using Data Poisoning](https://mlsanity.com/paper/1712.05526/) (2017)
- [CogAgent: A Visual Language Model for GUI Agents](https://mlsanity.com/paper/2312.08914/) (2023)
- [Fine-Pruning: Defending Against Backdooring Attacks on Deep Neural Networks](https://mlsanity.com/paper/1805.12185/) (2018)
- [GPT-4V(ision) is a Generalist Web Agent, if Grounded](https://mlsanity.com/paper/2401.01614/) (2024)
- [LayoutLM: Pre-training of Text and Layout for Document Image Understanding](https://mlsanity.com/paper/1912.13318/) (2019)
- [STRIP: A Defence Against Trojan Attacks on Deep Neural Networks](https://mlsanity.com/paper/1902.06531/) (2019)
- [Backdoor Learning: A Survey](https://mlsanity.com/paper/2007.08745/) (2020)

## Abstract (arXiv)

MLLMs are increasingly deployed in user-facing applications, yet they inherit backdoor risks from the pipelines used to construct them: triggers may reside in images, texts, or both. Existing model-level backdoor removal methods, largely designed for conventional classifiers, show limited effectiveness on MLLMs, while MLLM-specific defenses mainly operate at inference time, filtering suspicious inputs without removing the backdoor embedded in the model. To address this gap and eliminate latent backdoors from MLLMs at their source, we present RACER, a model-level repair framework motivated by a key observation: backdoors induce abnormal layer-to-layer evolution in internal representations, which we term the layer-wise inconsistency anomaly. Importantly, this anomaly is modality-dependent, concentrating primarily in the token region encoding the trigger features that the backdoor model actually relies on. RACER therefore decomposes the fused representation into visual and textual token regions, normalizes their layer-wise inconsistency separately, and recomposes them using modality-aware weights over a deep-layer window, yielding a region-aware inconsistency objective that better captures localized backdoor-induced anomalies. Through a min-max optimization, this objective drives worst-case perturbation synthesis and adversarial fine-tuning against the resulting perturbation to repair the model, suppressing the deep representational directional shifts on which backdoor behaviors rely. RACER requires only 100 clean samples and no knowledge of the trigger, attack objective, or even whether the input model contains a backdoor. Evaluations on three open-source MLLMs across 36 backdoor settings spanning image, text, and multimodal triggers show that RACER reduces the average ASR to 1.1%, reaching 0% in 32 settings, while preserving clean-task utility on both backdoor and clean models.