# Leveraging existing sparse point annotations for benthic imagery dense segmentation

arXiv: https://arxiv.org/abs/2608.17561 · HTML: https://mlsanity.com/paper/2608.17561/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 24 of its 37 references that are in the map.
- First posted on arXiv 18 Aug 2026.

## Builds on (most cited first, 24 of 24)

- [Segment Anything](https://mlsanity.com/paper/2304.02643/) (2023)
- [DINOv2: Learning Robust Visual Features without Supervision](https://mlsanity.com/paper/2304.07193/) (2023)
- [Prototypical Networks for Few-shot Learning](https://mlsanity.com/paper/1703.05175/) (2017)
- [SegFormer: Simple and Efficient Design for Semantic Segmentation with Transformers](https://mlsanity.com/paper/2105.15203/) (2021)
- [SAM 2: Segment Anything in Images and Videos](https://mlsanity.com/paper/2408.00714/) (2024)
- [FixMatch: Simplifying Semi-Supervised Learning with Consistency and Confidence](https://mlsanity.com/paper/2001.07685/) (2020)
- [DINOv3](https://mlsanity.com/paper/2508.10104/) (2025)
- [Generalized Cross Entropy Loss for Training Deep Neural Networks with Noisy Labels](https://mlsanity.com/paper/1805.07836/) (2018)
- [SAM 3: Segment Anything with Concepts](https://mlsanity.com/paper/2511.16719/) (2025)
- [Vision Transformers Need Registers](https://mlsanity.com/paper/2309.16588/) (2023)
- [FlexMatch: Boosting Semi-Supervised Learning with Curriculum Pseudo Labeling](https://mlsanity.com/paper/2110.08263/) (2021)
- [Symmetric Cross Entropy for Robust Learning with Noisy Labels](https://mlsanity.com/paper/1908.06112/) (2019)
- [PANet: Few-Shot Image Semantic Segmentation with Prototype Alignment](https://mlsanity.com/paper/1908.06391/) (2019)
- [Confident Learning: Estimating Uncertainty in Dataset Labels](https://mlsanity.com/paper/1911.00068/) (2019)
- [Identifying Mislabeled Data using the Area Under the Margin Ranking](https://mlsanity.com/paper/2001.10528/) (2020)
- [Normalized Loss Functions for Deep Learning with Noisy Labels](https://mlsanity.com/paper/2006.13554/) (2020)
- [FreeMatch: Self-adaptive Thresholding for Semi-supervised Learning](https://mlsanity.com/paper/2205.07246/) (2022)
- [Semi-Supervised Semantic Segmentation Using Unreliable Pseudo-Labels](https://mlsanity.com/paper/2203.03884/) (2022)
- [Rethinking Semantic Segmentation: A Prototype View](https://mlsanity.com/paper/2203.15102/) (2022)
- [Denoising Vision Transformers](https://mlsanity.com/paper/2401.02957/) (2024)
- [SAMRefiner: Taming Segment Anything Model for Universal Mask Refinement](https://mlsanity.com/paper/2502.06756/) (2025)
- [Point Label Aware Superpixels for Multi-species Segmentation of Underwater Imagery](https://mlsanity.com/paper/2202.13487/) (2022)
- [The Coralscapes Dataset: Semantic Scene Understanding in Coral Reefs](https://mlsanity.com/paper/2503.20000/) (2025)
- [SSeg: Active Sparse Point-Label Augmentation for Semantic Segmentation](https://mlsanity.com/paper/2510.10163/) (2025)

## Abstract (arXiv)

The health of marine ecosystems is a critical indicator of global environmental change, yet the physical constraints of underwater observation and the intrinsic challenges of processing marine imagery severely limit the scalability of systematic monitoring. While recent visual foundation models such as the Segment Anything Model (SAM) series show great promise, they still struggle with the fine-grained recognition required in these complex scenarios and still require expert supervision. Our work addresses this gap by bridging state-of-the-art foundation models with existing sparse supervision. Because historical benthic surveys are typically annotated with only a few sparse expert points per image, we utilize these legacy point-labels as visual prompts for SAM2. Our primary contribution is a novel mechanism to automatically identify which of these points are suitable, and which are actively harmful, when used for propagation. By filtering out unreliable points, we extract high-quality pseudo-ground-truth masks capable of training more accurate, fine-grained semantic segmentation models. We demonstrate the effectiveness of our approach on public benthic data and introduce a new, challenging benchmark featuring real-world sparse expert annotations, paving the way for scalable ecological analysis.