# Tokenizer-Generator Coupling in Medical Image Generation

arXiv: https://arxiv.org/abs/2608.07713 · HTML: https://mlsanity.com/paper/2608.07713/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 45 of its 53 references that are in the map.
- First posted on arXiv 7 Aug 2026.

## Builds on (most cited first, 30 of 45)

- [High-Resolution Image Synthesis with Latent Diffusion Models](https://mlsanity.com/paper/2112.10752/) (2021)
- [The Unreasonable Effectiveness of Deep Features as a Perceptual Metric](https://mlsanity.com/paper/1801.03924/) (2018)
- [Scalable Diffusion Models with Transformers](https://mlsanity.com/paper/2212.09748/) (2022)
- [Neural Discrete Representation Learning](https://mlsanity.com/paper/1711.00937/) (2017)
- [RoFormer: Enhanced Transformer with Rotary Position Embedding](https://mlsanity.com/paper/2104.09864/) (2021)
- [Improved Denoising Diffusion Probabilistic Models](https://mlsanity.com/paper/2102.09672/) (2021)
- [Flow Straight and Fast: Learning to Generate and Transfer Data with Rectified Flow](https://mlsanity.com/paper/2209.03003/) (2022)
- [Taming Transformers for High-Resolution Image Synthesis](https://mlsanity.com/paper/2012.09841/) (2020)
- [Improved Techniques for Training GANs](https://mlsanity.com/paper/1606.03498/) (2016)
- [Perceptual Losses for Real-Time Style Transfer and Super-Resolution](https://mlsanity.com/paper/1603.08155/) (2016)
- [SDEdit: Guided Image Synthesis and Editing with Stochastic Differential Equations](https://mlsanity.com/paper/2108.01073/) (2021)
- [Structured Denoising Diffusion Models in Discrete State-Spaces](https://mlsanity.com/paper/2107.03006/) (2021)
- [The Concrete Distribution: A Continuous Relaxation of Discrete Random Variables](https://mlsanity.com/paper/1611.00712/) (2016)
- [MaskGIT: Masked Generative Image Transformer](https://mlsanity.com/paper/2202.04200/) (2022)
- [Visual Autoregressive Modeling: Scalable Image Generation via Next-Scale Prediction](https://mlsanity.com/paper/2404.02905/) (2024)
- [Autoregressive Model Beats Diffusion: Llama for Scalable Image Generation](https://mlsanity.com/paper/2406.06525/) (2024)
- [Discrete Diffusion Modeling by Estimating the Ratios of the Data Distribution](https://mlsanity.com/paper/2310.16834/) (2023)
- [MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification](https://mlsanity.com/paper/2110.14795/) (2021)
- [Autoregressive Image Generation without Vector Quantization](https://mlsanity.com/paper/2406.11838/) (2024)
- [Language Model Beats Diffusion -- Tokenizer is Key to Visual Generation](https://mlsanity.com/paper/2310.05737/) (2023)
- [Simplified and Generalized Masked Diffusion for Discrete Data](https://mlsanity.com/paper/2406.04329/) (2024)
- [Finite Scalar Quantization: VQ-VAE Made Simple](https://mlsanity.com/paper/2309.15505/) (2023)
- [Reconstruction vs. Generation: Taming Optimization Dilemma in Latent Diffusion Models](https://mlsanity.com/paper/2501.01423/) (2025)
- [Discrete Flow Matching](https://mlsanity.com/paper/2407.15595/) (2024)
- [Generative Flows on Discrete State-Spaces: Enabling Multimodal Flows with Applications to Protein Co-Design](https://mlsanity.com/paper/2402.04997/) (2024)
- [Rethinking Lossy Compression: The Rate-Distortion-Perception Tradeoff](https://mlsanity.com/paper/1901.07821/) (2019)
- [How Faithful is your Synthetic Data? Sample-level Metrics for Evaluating and Auditing Generative Models](https://mlsanity.com/paper/2102.08921/) (2021)
- [Recent Advances in Autoencoder-Based Representation Learning](https://mlsanity.com/paper/1812.05069/) (2018)
- [MaskBit: Embedding-free Image Generation via Bit Tokens](https://mlsanity.com/paper/2409.16211/) (2024)
- [Generative models improve fairness of medical classifiers under distribution shifts](https://mlsanity.com/paper/2304.09218/) (2023)

## Built on by (most cited first, 1 of 1)

- [Latent Space Is Not Flat: Rethinking Latent Structure for 3D Medical Image Synthesis](https://mlsanity.com/paper/2609.32794/) (2026)

## Abstract (arXiv)

Latent medical image generators usually treat the tokenizer as fixed preprocessing. We test whether this separation holds in a controlled ChestMNIST study at 64×64 that crosses discrete tokenizers, generator families, and sampler settings under a shared latent grid, with continuous-latent reference cells. The rankings depend jointly on the tokenizer, generator, and sampler. The best quantizer changes with the generator, and validation-based sampler selection changes the apparent generator ranking. We interpret this through a rate-distortion-modelability framing in which modelability is conditional on the generator, sampler, and inference budget. The interaction persists when the vocabulary-1024 block is retrained at three seeds, with 4 of 9 pairwise quantizer comparisons exceeding three seed standard deviations, including a reversal between LFQ and FSQ from MaskGIT to D3PM; the rest of the grid was trained at a single seed and is correspondingly less certain. Reconstruction PSNR alone is not a reliable selection criterion. On LFQ-1024, retuning the D3PM and SEDD samplers on a held-out validation split reduces FID-192 from 0.44/0.41 at the default budget to 0.09/0.10 at lower NFE, replicated across seeds, although the continuous references were not given an equivalent sampler sweep. FID-192, our internal ranking metric, ranks consistently with standard FID-2048 (Spearman 0.89) and with a label-free classifier two-sample test (0.86). All experiments are unconditional, use low-resolution 64×64 medical-style images and are evaluated with non-clinical FID-based metrics, and our claims are limited to that setting. Implementations are released at https://github.com/liamchalcroft/medtokenizers and https://github.com/liamchalcroft/medlatents.
