# An Ontology-Guided, Deduplication-Aware Extraction Layer for Knowledge Graph Construction from Heterogeneous Documents

arXiv: https://arxiv.org/abs/2607.28662 · HTML: https://mlsanity.com/paper/2607.28662/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 13 of its 42 references that are in the map.
- First posted on arXiv 22 Jul 2026.

## Builds on (most cited first, 13 of 13)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [Language Models are Few-Shot Learners](https://mlsanity.com/paper/2005.14165/) (2020)
- [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://mlsanity.com/paper/2005.11401/) (2020)
- [Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks](https://mlsanity.com/paper/1908.10084/) (2019)
- [Qwen3 Technical Report](https://mlsanity.com/paper/2505.09388/) (2025)
- [Efficient Memory Management for Large Language Model Serving with PagedAttention](https://mlsanity.com/paper/2309.06180/) (2023)
- [Lost in the Middle: How Language Models Use Long Contexts](https://mlsanity.com/paper/2307.03172/) (2023)
- [Billion-scale similarity search with GPUs](https://mlsanity.com/paper/1702.08734/) (2017)
- [Unifying Large Language Models and Knowledge Graphs: A Roadmap](https://mlsanity.com/paper/2306.08302/) (2023)
- [ChatIE: Zero-Shot Information Extraction via Chatting with ChatGPT](https://mlsanity.com/paper/2302.10205/) (2023)
- [GPT-NER: Named Entity Recognition via Large Language Models](https://mlsanity.com/paper/2304.10428/) (2023)
- [Revisiting Relation Extraction in the era of Large Language Models](https://mlsanity.com/paper/2305.05003/) (2023)
- [LLMs for Knowledge Graph Construction and Reasoning: Recent Capabilities and Future Opportunities](https://mlsanity.com/paper/2305.13168/) (2023)

## Abstract (arXiv)

Large language models extract entities and relationships from unstructured documents fluently but inconsistently: type vocabularies fracture across documents, the same person surfaces under several name variants, relationships duplicate, and distinct individuals who share a name risk silent conflation. This paper presents the design, implementation, and empirical refinement of a production extraction layer that converts a live document stream into a validated knowledge graph aligned to a formal ontology. The system consumes document metadata from Kafka, routes PDF, spreadsheet, Office, and image content through handlers built for each format, and extracts entities and relationships in two passes using a locally hosted Qwen3.5-9B model tuned on the ontology. Its distinguishing component is ontology-guided extraction: the relevant slice of a curated ontology is retrieved live from a graph database by embedding similarity and injected into the extraction prompt, reducing catalog overhead by about 94 percent relative to static domain slices. Extracted results then pass through a refinement pipeline of five stages: deterministic cleaning, merging across chunks, a second pass for relationships, six deduplication algorithms that require no model inference, and an embedding resolution subsystem whose conflict guard no similarity score can override. Evaluation on intelligence corpora improved search recall from roughly 70 to 95 percent with no false merges, and corrected seven classes of silent quality defect, ranging from a bug that truncated source text by a single character to the systematic duplication of entities that carried title prefixes.