# BATS: Resource-Efficient Volumetric Segmentation with Boundary-Aware Mixed-Resolution Tokens

arXiv: https://arxiv.org/abs/2607.26829 · HTML: https://mlsanity.com/paper/2607.26829/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 28 of its 36 references that are in the map.
- First posted on arXiv 29 Jul 2026.

## Builds on (most cited first, 28 of 28)

- [Swin Transformer: Hierarchical Vision Transformer using Shifted Windows](https://mlsanity.com/paper/2103.14030/) (2021)
- [Deformable DETR: Deformable Transformers for End-to-End Object Detection](https://mlsanity.com/paper/2010.04159/) (2020)
- [Attention U-Net: Learning Where to Look for the Pancreas](https://mlsanity.com/paper/1804.03999/) (2018)
- [Token Merging: Your ViT But Faster](https://mlsanity.com/paper/2210.09461/) (2022)
- [DynamicViT: Efficient Vision Transformers with Dynamic Token Sparsification](https://mlsanity.com/paper/2106.02034/) (2021)
- [The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification](https://mlsanity.com/paper/2107.02314/) (2021)
- [The Liver Tumor Segmentation Benchmark (LiTS)](https://mlsanity.com/paper/1901.04056/) (2019)
- [Self-Supervised Pre-Training of Swin Transformers for 3D Medical Image Analysis](https://mlsanity.com/paper/2111.14791/) (2021)
- [U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation](https://mlsanity.com/paper/2401.04722/) (2024)
- [AdaViT: Adaptive Tokens for Efficient Vision Transformer](https://mlsanity.com/paper/2112.07658/) (2021)
- [AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation](https://mlsanity.com/paper/2206.08023/) (2022)
- [3D MRI brain tumor segmentation using autoencoder regularization](https://mlsanity.com/paper/1810.11654/) (2018)
- [Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images](https://mlsanity.com/paper/1808.08114/) (2018)
- [nnU-Net Revisited: A Call for Rigorous Validation in 3D Medical Image Segmentation](https://mlsanity.com/paper/2404.09556/) (2024)
- [CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentation](https://mlsanity.com/paper/2103.03024/) (2021)
- [nnFormer: Interleaved Transformer for Volumetric Segmentation](https://mlsanity.com/paper/2109.03201/) (2021)
- [MedNeXt: Transformer-driven Scaling of ConvNets for Medical Image Segmentation](https://mlsanity.com/paper/2303.09975/) (2023)
- [UNETR++: Delving into Efficient and Accurate 3D Medical Image Segmentation](https://mlsanity.com/paper/2212.04497/) (2022)
- [The KiTS21 Challenge: Automatic segmentation of kidneys, renal tumors, and renal cysts in corticomedullary-phase CT](https://mlsanity.com/paper/2307.01984/) (2023)
- [STU-Net: Scalable and Transferable Medical Image Segmentation Models Empowered by Large-Scale Supervised Pre-training](https://mlsanity.com/paper/2304.06716/) (2023)
- [DiNTS: Differentiable Neural Network Topology Search for 3D Medical Image Segmentation](https://mlsanity.com/paper/2103.15954/) (2021)
- [Automated 3D Segmentation of Kidneys and Tumors in MICCAI KiTS 2023 Challenge](https://mlsanity.com/paper/2310.04110/) (2023)
- [BATFormer: Towards Boundary-Aware Lightweight Transformer for Efficient Medical Image Segmentation](https://mlsanity.com/paper/2206.14409/) (2022)
- [The Lighter The Better: Rethinking Transformers in Medical Image Segmentation Through Adaptive Pruning](https://mlsanity.com/paper/2206.14413/) (2022)
- [AutoFocusFormer: Image Segmentation off the Grid](https://mlsanity.com/paper/2304.12406/) (2023)
- [Token Sparsification for Faster Medical Image Segmentation](https://mlsanity.com/paper/2303.06522/) (2023)
- [TokenSeg: Efficient 3D Medical Image Segmentation via Hierarchical Visual Token Compression](https://mlsanity.com/paper/2601.04519/) (2026)
- [ARTA: Adaptive Mixed-Resolution Token Allocation for Efficient Dense Feature Extraction](https://mlsanity.com/paper/2603.26258/) (2026)

## Built on by (most cited first, 1 of 1)

- [Variable-Granularity Tokenization for High-Resolution Object Detection](https://mlsanity.com/paper/2608.28706/) (2026)

## Abstract (arXiv)

Many high-performing volumetric segmentation models maintain dense multi-scale feature maps, leading to high activation memory and inference cost. We present BATS (Boundary-Aware Token Selection), a 3D medical image segmentation architecture that concentrates fine-resolution processing near predicted class boundaries. A dense boundary predictor identifies where additional resolution is needed, while a fine-first context cascade constructs an input-dependent mixed-resolution hierarchy. Homogeneous regions are represented coarsely, with finer tokens retained around boundaries, thin structures, and small targets. The sparse hierarchy is refined and rasterised into a dense segmentation. BATS predicts boundary relevance independently at every resolution level, preventing an erroneous coarse-scale decision from suppressing fine-scale evidence. Parent cluster attention further injects hierarchical ancestor tokens into local attention neighbourhoods, providing cross-scale context without dense multi-scale feature maps or cross-scale neighbour search. We evaluate BATS on five public CT and MRI datasets using the standardised nnU-Net Revisited protocol. BATS achieves the highest LiTS Dice among the compared methods and averages within 0.37 Dice points of the strongest dense baseline, MedNeXt-L, across the five datasets. Relative to MedNeXt-L, it reduces peak allocated GPU memory by more than 53% on KiTS, LiTS, and BraTS. Inference is up to 30% faster on KiTS and LiTS, which retain fewer tokens, but slower on the more token-dense BraTS. Mixed-resolution processing therefore provides consistent memory savings, while runtime and accuracy gains depend on dataset boundary density.