# QuITE: Query-Based Irregular Time Series Embedding

arXiv: https://arxiv.org/abs/2605.28166 · HTML: https://mlsanity.com/paper/2605.28166/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 18 of its 34 references that are in the map.
- First posted on arXiv 27 May 2026.

## Builds on (most cited first, 18 of 18)

- [A Time Series is Worth 64 Words: Long-term Forecasting with Transformers](https://mlsanity.com/paper/2211.14730/) (2022)
- [iTransformer: Inverted Transformers Are Effective for Time Series Forecasting](https://mlsanity.com/paper/2310.06625/) (2023)
- [Recurrent Neural Networks for Multivariate Time Series with Missing Values](https://mlsanity.com/paper/1606.01865/) (2016)
- [TimeXer: Empowering Transformers for Time Series Forecasting with Exogenous Variables](https://mlsanity.com/paper/2402.19072/) (2024)
- [TSMixer: An All-MLP Architecture for Time Series Forecasting](https://mlsanity.com/paper/2303.06053/) (2023)
- [Multi-Time Attention Networks for Irregularly Sampled Time Series](https://mlsanity.com/paper/2101.10318/) (2021)
- [Set Functions for Time Series](https://mlsanity.com/paper/1909.12064/) (2019)
- [Is Mamba Effective for Time Series Forecasting?](https://mlsanity.com/paper/2403.11144/) (2024)
- [Graph-Guided Network for Irregularly Sampled Multivariate Time Series](https://mlsanity.com/paper/2110.05357/) (2021)
- [Pathformer: Multi-scale Transformers with Adaptive Pathways for Time Series Forecasting](https://mlsanity.com/paper/2402.05956/) (2024)
- [Modeling Irregular Time Series with Continuous Recurrent Units](https://mlsanity.com/paper/2111.11344/) (2021)
- [Neural Flows: Efficient Alternative to Neural ODEs](https://mlsanity.com/paper/2110.13040/) (2021)
- [Phased LSTM: Accelerating Recurrent Network Training for Long or Event-based Sequences](https://mlsanity.com/paper/1610.09513/) (2016)
- [Interpolation-Prediction Networks for Irregularly Sampled Time Series](https://mlsanity.com/paper/1909.07782/) (2019)
- [ContiFormer: Continuous-Time Transformer for Irregular Time Series Modeling](https://mlsanity.com/paper/2402.10635/) (2024)
- [Warpformer: A Multi-scale Modeling Approach for Irregular Clinical Time Series](https://mlsanity.com/paper/2306.09368/) (2023)
- [PatchMixer: A Patch-Mixing Architecture for Long-Term Time Series Forecasting](https://mlsanity.com/paper/2310.00655/) (2023)
- [Time-IMM: A Dataset and Benchmark for Irregular Multimodal Multivariate Time Series](https://mlsanity.com/paper/2506.10412/) (2025)

## Abstract (arXiv)

Irregular Multivariate Time Series (IMTS) are common in practice, yet their irregular sampling complicates effective modeling. Existing approaches typically either (i) design specialized architectures that limit the reuse of proven Multivariate Time Series (MTS) models, or (ii) map IMTS onto regular temporal grids through interpolation, which may distort temporal dynamics by introducing artificial values. To address these limitations, we propose a new input-embedding-based approach. We identify that the key bottleneck lies not in the backbone architecture, but in conventional embedding layers that assume uniform sampling. In this work, we introduce QuITE (Query-Based Irregular Time Series Embedding), a simple yet effective plug-and-play embedding module for IMTS. QuITE employs learnable query tokens to aggregate irregular observations through a single self-attention layer, directly producing backbone-compatible latent representations without artificial value generation or architectural modification. Extensive experiments on real-world benchmarks show that QuITE consistently improves MTS models, yielding average relative gains of up to 54.7% in forecasting and 15.8% in classification across diverse datasets and backbone architectures. Code is available at: https://github.com/Meaningfull9502/QuITE.