# A Mechanistic Investigation of Supervised Fine Tuning

arXiv: https://arxiv.org/abs/2605.11426 · HTML: https://mlsanity.com/paper/2605.11426/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Placed in SAE features and their applications, one of 13 directions in Mechanistic interpretability.
- Builds on 5 of its 15 references that are in the map.
- First posted on arXiv 12 May 2026.

## Placed in

- Mechanistic interpretability / [SAE features and their applications](https://mlsanity.com/mechinterp/sae-features-and-their-applications/)

## Builds on (most cited first, 5 of 5)

- [Training language models to follow instructions with human feedback](https://mlsanity.com/paper/2203.02155/) (2022)
- [Training Verifiers to Solve Math Word Problems](https://mlsanity.com/paper/2110.14168/) (2021)
- [Judging LLM-as-a-Judge with MT-Bench and Chatbot Arena](https://mlsanity.com/paper/2306.05685/) (2023)
- [A Broad-Coverage Challenge Corpus for Sentence Understanding through Inference](https://mlsanity.com/paper/1704.05426/) (2017)
- [Sparse Autoencoders Find Highly Interpretable Features in Language Models](https://mlsanity.com/paper/2309.08600/) (2023)

## Abstract (arXiv)

The cosine similarity between a large language model's hidden activations before and after Supervised Fine-Tuning (SFT) remains very high. This, at first glance, suggests that SFT leaves the model's activation geometry largely undisturbed. However, projecting both sets of activations through a Sparse Autoencoder (SAE) pretrained on the base model reveals that the underlying sparse latents diverge significantly. We introduce a novel investigative pipeline which utilizes these pretrained SAEs as a high-resolution diagnostic tool to mechanistically investigate the drivers of this representational divergence. Through our analytical pipeline, we discover task-specific and layer-specific distributions of the precise semantic features that are systematically altered during supervised fine-tuning. We additionally identify a layer-wise update profile specific to safety alignment. All code, experimental scripts, and analysis files associated with this work are publicly available at: https://github.com/ruhzi/sae-investigation.