# Graph Topology Information Enhanced Heterogeneous Graph Representation Learning

arXiv: https://arxiv.org/abs/2604.05732 · HTML: https://mlsanity.com/paper/2604.05732/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 29 of its 40 references that are in the map.
- First posted on arXiv 7 Apr 2026.

## Builds on (most cited first, 29 of 29)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [RoBERTa: A Robustly Optimized BERT Pretraining Approach](https://mlsanity.com/paper/1907.11692/) (2019)
- [Graph Attention Networks](https://mlsanity.com/paper/1710.10903/) (2017)
- [How Powerful are Graph Neural Networks?](https://mlsanity.com/paper/1810.00826/) (2018)
- [Prefix-Tuning: Optimizing Continuous Prompts for Generation](https://mlsanity.com/paper/2101.00190/) (2021)
- [Pre-train, Prompt, and Predict: A Systematic Survey of Prompting Methods in Natural Language Processing](https://mlsanity.com/paper/2107.13586/) (2021)
- [Language Models as Knowledge Bases?](https://mlsanity.com/paper/1909.01066/) (2019)
- [node2vec: Scalable Feature Learning for Networks](https://mlsanity.com/paper/1607.00653/) (2016)
- [Making Pre-trained Language Models Better Few-shot Learners](https://mlsanity.com/paper/2012.15723/) (2020)
- [How Can We Know What Language Models Know?](https://mlsanity.com/paper/1911.12543/) (2019)
- [GPT Understands, Too](https://mlsanity.com/paper/2103.10385/) (2021)
- [It's Not Just Size That Matters: Small Language Models Are Also Few-Shot Learners](https://mlsanity.com/paper/2009.07118/) (2020)
- [Heterogeneous Graph Transformer](https://mlsanity.com/paper/2003.01332/) (2020)
- [Graph Transformer Networks](https://mlsanity.com/paper/1911.06455/) (2019)
- [MAGNN: Metapath Aggregated Graph Neural Network for Heterogeneous Graph Embedding](https://mlsanity.com/paper/2002.01680/) (2020)
- [Factual Probing Is [MASK]: Learning vs. Learning to Recall](https://mlsanity.com/paper/2104.05240/) (2021)
- [PTR: Prompt Tuning with Rules for Text Classification](https://mlsanity.com/paper/2105.11259/) (2021)
- [PPT: Pre-trained Prompt Tuning for Few-shot Learning](https://mlsanity.com/paper/2109.04332/) (2021)
- [Learning Discrete Structures for Graph Neural Networks](https://mlsanity.com/paper/1903.11960/) (2019)
- [Iterative Deep Graph Learning for Graph Neural Networks: Better and Robust Node Embeddings](https://mlsanity.com/paper/2006.13009/) (2020)
- [Commonsense Knowledge Mining from Pretrained Models](https://mlsanity.com/paper/1909.00505/) (2019)
- [Are we really making much progress? Revisiting, benchmarking, and refining heterogeneous graph neural networks](https://mlsanity.com/paper/2112.14936/) (2021)
- [Self-supervised Heterogeneous Graph Neural Network with Co-contrastive Learning](https://mlsanity.com/paper/2105.09111/) (2021)
- [Learning graphs from data: A signal representation perspective](https://mlsanity.com/paper/1806.00848/) (2018)
- [Towards Unsupervised Deep Graph Structure Learning](https://mlsanity.com/paper/2201.06367/) (2022)
- [SLAPS: Self-Supervision Improves Structure Learning for Graph Neural Networks](https://mlsanity.com/paper/2102.05034/) (2021)
- [Generating Classification Weights with GNN Denoising Autoencoders for Few-Shot Learning](https://mlsanity.com/paper/1905.01102/) (2019)
- [Compact Graph Structure Learning via Mutual Information Compression](https://mlsanity.com/paper/2201.05540/) (2022)
- [Revisiting Item Promotion in GNN-based Collaborative Filtering: A Masked Targeted Topological Attack Perspective](https://mlsanity.com/paper/2208.09979/) (2022)

## Abstract (arXiv)

Real-world heterogeneous graphs are inherently noisy and usually not in the optimal graph structures for downstream tasks, which often adversely affects the performance of GRL models in downstream tasks. Although Graph Structure Learning (GSL) methods have been proposed to learn graph structures and downstream tasks simultaneously, existing methods are predominantly designed for homogeneous graphs, while GSL for heterogeneous graphs remains largely unexplored. Two challenges arise in this context. Firstly, the quality of the input graph structure has a more profound impact on GNN-based heterogeneous GRL models compared to their homogeneous counterparts. Secondly, most existing homogenous GRL models encounter memory consumption issues when applied directly to heterogeneous graphs. In this paper, we propose a novel Graph Topology learning Enhanced Heterogeneous Graph Representation Learning framework (ToGRL).ToGRL learns high-quality graph structures and representations for downstream tasks by incorporating task-relevant latent topology information. Specifically, a novel GSL module is first proposed to extract downstream task-related topology information from a raw graph structure and project it into topology embeddings. These embeddings are utilized to construct a new graph with smooth graph signals. This two-stage approach to GSL separates the optimization of the adjacency matrix from node representation learning to reduce memory consumption. Following this, a representation learning module takes the new graph as input to learn embeddings for downstream tasks. ToGRL also leverages prompt tuning to better utilize the knowledge embedded in learned representations, thus enhancing adaptability to downstream tasks. Extensive experiments on five real-world datasets show that our ToGRL outperforms state-of-the-art methods by a large margin.