# Coherence Collapse: Diagnosing Why Code Agents Fail After Reaching the Right Code

arXiv: https://arxiv.org/abs/2603.24631 · HTML: https://mlsanity.com/paper/2603.24631/

## Key facts

- Cited by 5 papers in the map (data through 14 Oct 2026).
- Placed in Software engineering coding agents, one of 16 directions in LLM agents and tool use.
- Builds on 11 of its 27 references that are in the map.
- First posted on arXiv 25 Mar 2026.

## Placed in

- LLM agents and tool use / [Software engineering coding agents](https://mlsanity.com/agents/software-engineering-coding-agents/)

## Builds on (most cited first, 11 of 11)

- [Evaluating Large Language Models Trained on Code](https://mlsanity.com/paper/2107.03374/) (2021)
- [Toolformer: Language Models Can Teach Themselves to Use Tools](https://mlsanity.com/paper/2302.04761/) (2023)
- [SWE-bench: Can Language Models Resolve Real-World GitHub Issues?](https://mlsanity.com/paper/2310.06770/) (2023)
- [WebArena: A Realistic Web Environment for Building Autonomous Agents](https://mlsanity.com/paper/2307.13854/) (2023)
- [Language Models as Zero-Shot Planners: Extracting Actionable Knowledge for Embodied Agents](https://mlsanity.com/paper/2201.07207/) (2022)
- [OpenHands: An Open Platform for AI Software Developers as Generalist Agents](https://mlsanity.com/paper/2407.16741/) (2024)
- [CodeBLEU: a Method for Automatic Evaluation of Code Synthesis](https://mlsanity.com/paper/2009.10297/) (2020)
- [Live-SWE-agent: Can Software Engineering Agents Self-Evolve on the Fly?](https://mlsanity.com/paper/2511.13646/) (2025)
- [Understanding Software Engineering Agents: A Study of Thought-Action-Result Trajectories](https://mlsanity.com/paper/2506.18824/) (2025)
- [Understanding Code Agent Behaviour: An Empirical Study of Success and Failure Trajectories](https://mlsanity.com/paper/2511.00197/) (2025)
- [DevBench: A Realistic, Developer-Informed Benchmark for Code Generation Models](https://mlsanity.com/paper/2601.11895/) (2026)

## Built on by (most cited first, 5 of 5)

- [RepoMirage: Probing Repository Context Reasoning in Code Agents with Perturbations](https://mlsanity.com/paper/2605.26177/) (2026)
- [Code Isn't Memory: A Structural Codebase Index Inside a Coding Agent](https://mlsanity.com/paper/2606.22417/) (2026)
- [The Horizon Gap: Planning, Memory, Execution, Training, and Evaluation for Long-Horizon LLM Agents](https://mlsanity.com/paper/2608.06663/) (2026)
- [The Working Set of a Coding Agent: Coherence Debt in Repository-Scale Tasks](https://mlsanity.com/paper/2608.16630/) (2026)
- [Analyzing and Mitigating Cost-Inefficient Behaviors in Coding Agents](https://mlsanity.com/paper/2609.30725/) (2026)

## Abstract (arXiv)

Code agents resolve 65-70% of SWE-bench Verified issues, but Pass@1 cannot tell us why the rest fail, and, as we show, capable-model failures are systematically misdiagnosed without trajectory data. We introduce TRAJEVAL, a training-free decomposition of agent trajectories into reference-patch-aligned search, read, and edit stages, and apply it across 16,758 trajectories spanning three architectures and seven models. The dominant failure of capable models is not localization: 60-69% of failures on SWE-Agent and OpenHands reach and edit the correct functions yet still produce incorrect patches, and the pattern persists for most models on the bash-only LiveSWEAgent. Within this Edit-Quality residual, we identify Coherence Collapse, where the agent reaches correct code and then overwrites or thrashes it, as the largest theme, replicating across SWE-bench Verified and the multilingual PolyBench Verified. In 5 cases, the agent produces a patch bit-identical to the gold reference mid-trajectory and destroys it later; an edit-commit checkpoint recovers all 5 against the SWE-bench Docker harness. A reference-free consensus-driven variant yields a directional +3.0 pp Pass@1 measurement on GPT-5 (p=0.08).