# Towards Safer Large Reasoning Models by Promoting Safety Decision-Making before Chain-of-Thought Generation

arXiv: https://arxiv.org/abs/2603.17368 · HTML: https://mlsanity.com/paper/2603.17368/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Placed in Reasoning for agents, planning and code, one of 17 directions in LLM reasoning.
- Builds on 37 of its 45 references that are in the map.
- First posted on arXiv 18 Mar 2026.

## Placed in

- LLM reasoning / [Reasoning for agents, planning and code](https://mlsanity.com/lr/reasoning-for-agents-planning-and-code/)
- LLM safety and security / [Safety alignment, refusal and guardrails](https://mlsanity.com/safety/safety-alignment-refusal-and-guardrails/)

## Builds on (most cited first, 30 of 37)

- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Training language models to follow instructions with human feedback](https://mlsanity.com/paper/2203.02155/) (2022)
- [Llama 2: Open Foundation and Fine-Tuned Chat Models](https://mlsanity.com/paper/2307.09288/) (2023)
- [Chain-of-Thought Prompting Elicits Reasoning in Large Language Models](https://mlsanity.com/paper/2201.11903/) (2022)
- [Qwen3 Technical Report](https://mlsanity.com/paper/2505.09388/) (2025)
- [Evaluating Large Language Models Trained on Code](https://mlsanity.com/paper/2107.03374/) (2021)
- [DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning](https://mlsanity.com/paper/2501.12948/) (2025)
- [Self-Consistency Improves Chain of Thought Reasoning in Language Models](https://mlsanity.com/paper/2203.11171/) (2022)
- [GPT-4o System Card](https://mlsanity.com/paper/2410.21276/) (2024)
- [Gemini 2.5: Pushing the Frontier with Advanced Reasoning, Multimodality, Long Context, and Next Generation Agentic Capabilities](https://mlsanity.com/paper/2507.06261/) (2025)
- [Let's Verify Step by Step](https://mlsanity.com/paper/2305.20050/) (2023)
- [Training a Helpful and Harmless Assistant with Reinforcement Learning from Human Feedback](https://mlsanity.com/paper/2204.05862/) (2022)
- [Tree of Thoughts: Deliberate Problem Solving with Large Language Models](https://mlsanity.com/paper/2305.10601/) (2023)
- [Universal and Transferable Adversarial Attacks on Aligned Language Models](https://mlsanity.com/paper/2307.15043/) (2023)
- [GPQA: A Graduate-Level Google-Proof Q&A Benchmark](https://mlsanity.com/paper/2311.12022/) (2023)
- [Jailbroken: How Does LLM Safety Training Fail?](https://mlsanity.com/paper/2307.02483/) (2023)
- [HarmBench: A Standardized Evaluation Framework for Automated Red Teaming and Robust Refusal](https://mlsanity.com/paper/2402.04249/) (2024)
- [Jailbreaking Black Box Large Language Models in Twenty Queries](https://mlsanity.com/paper/2310.08419/) (2023)
- [Is Your Code Generated by ChatGPT Really Correct? Rigorous Evaluation of Large Language Models for Code Generation](https://mlsanity.com/paper/2305.01210/) (2023)
- [OpenAI GPT-5 System Card](https://mlsanity.com/paper/2601.03267/) (2025)
- [STaR: Bootstrapping Reasoning With Reasoning](https://mlsanity.com/paper/2203.14465/) (2022)
- [Solving math word problems with process- and outcome-based feedback](https://mlsanity.com/paper/2211.14275/) (2022)
- [Graph of Thoughts: Solving Elaborate Problems with Large Language Models](https://mlsanity.com/paper/2308.09687/) (2023)
- [DeepSeek-V3.2: Pushing the Frontier of Open Large Language Models](https://mlsanity.com/paper/2512.02556/) (2025)
- [AutoDAN: Generating Stealthy Jailbreak Prompts on Aligned Large Language Models](https://mlsanity.com/paper/2310.04451/) (2023)
- [Baseline Defenses for Adversarial Attacks Against Aligned Language Models](https://mlsanity.com/paper/2309.00614/) (2023)
- [SmoothLLM: Defending Large Language Models Against Jailbreaking Attacks](https://mlsanity.com/paper/2310.03684/) (2023)
- [A StrongREJECT for Empty Jailbreaks](https://mlsanity.com/paper/2402.10260/) (2024)
- [Certifying LLM Safety against Adversarial Prompting](https://mlsanity.com/paper/2309.02705/) (2023)
- [WildTeaming at Scale: From In-the-Wild Jailbreaks to (Adversarially) Safer Language Models](https://mlsanity.com/paper/2406.18510/) (2024)

## Built on by (most cited first, 2 of 2)

- [On the Efficiency-Safety Dilemma in Large Reasoning Models](https://mlsanity.com/paper/2609.23587/) (2026)
- [Towards Mitigating Deceptive Safety Alignment in Large Reasoning Models](https://mlsanity.com/paper/2609.36254/) (2026)

## Abstract (arXiv)

Large reasoning models (LRMs) achieved remarkable performance via chain-of-thought (CoT), but recent studies showed that such enhanced reasoning capabilities are at the expense of significantly degraded safety capabilities. In this paper, we reveal that LRMs' safety degradation occurs only after CoT is enabled, and this degradation is not observed when CoT is disabled. This observation motivates us to consider encouraging LRMs to make safety decisions before CoT generation. To this end, we propose a novel safety alignment method that promotes the safety decision-making of LRMs before starting CoT generation. Specifically, we first utilize a Bert-based classifier to extract safety decision signals from a safe model (e.g., a CoT-disabled LRM) and then integrate these signals into LRMs' safety alignment as auxiliary supervision. In this way, the safety gradients can be backpropagated to the LRMs' latent representations, effectively strengthening the LRMs' safety decision-making abilities against CoT generation. Extensive experiments demonstrate that our method substantially improves the safety capabilities of LRMs while effectively maintaining LRMs' general reasoning performance.