# VulnAgent-R2: Evidence-Calibrated Multi-Agent Auditing for Repository-Level Vulnerability Detection

arXiv: https://arxiv.org/abs/2603.13384 · HTML: https://mlsanity.com/paper/2603.13384/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Placed in Agent threats, guardrails and governance, one of 16 directions in LLM agents and tool use.
- Builds on 46 of its 56 references that are in the map.
- First posted on arXiv 11 Mar 2026.

## Placed in

- LLM agents and tool use / [Agent threats, guardrails and governance](https://mlsanity.com/agents/agent-threats-guardrails-and-governance/)

## Builds on (most cited first, 30 of 46)

- [Chain-of-Thought Prompting Elicits Reasoning in Large Language Models](https://mlsanity.com/paper/2201.11903/) (2022)
- [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://mlsanity.com/paper/2005.11401/) (2020)
- [Self-Consistency Improves Chain of Thought Reasoning in Language Models](https://mlsanity.com/paper/2203.11171/) (2022)
- [Reflexion: Language Agents with Verbal Reinforcement Learning](https://mlsanity.com/paper/2303.11366/) (2023)
- [Toolformer: Language Models Can Teach Themselves to Use Tools](https://mlsanity.com/paper/2302.04761/) (2023)
- [Self-Refine: Iterative Refinement with Self-Feedback](https://mlsanity.com/paper/2303.17651/) (2023)
- [SWE-bench: Can Language Models Resolve Real-World GitHub Issues?](https://mlsanity.com/paper/2310.06770/) (2023)
- [Code Llama: Open Foundation Models for Code](https://mlsanity.com/paper/2308.12950/) (2023)
- [SWE-agent: Agent-Computer Interfaces Enable Automated Software Engineering](https://mlsanity.com/paper/2405.15793/) (2024)
- [CodeBERT: A Pre-Trained Model for Programming and Natural Languages](https://mlsanity.com/paper/2002.08155/) (2020)
- [Qwen2.5-Coder Technical Report](https://mlsanity.com/paper/2409.12186/) (2024)
- [DeepSeek-Coder: When the Large Language Model Meets Programming -- The Rise of Code Intelligence](https://mlsanity.com/paper/2401.14196/) (2024)
- [CodeT5: Identifier-aware Unified Pre-trained Encoder-Decoder Models for Code Understanding and Generation](https://mlsanity.com/paper/2109.00859/) (2021)
- [StarCoder: may the source be with you!](https://mlsanity.com/paper/2305.06161/) (2023)
- [GraphCodeBERT: Pre-training Code Representations with Data Flow](https://mlsanity.com/paper/2009.08366/) (2020)
- [BigCodeBench: Benchmarking Code Generation with Diverse Function Calls and Complex Instructions](https://mlsanity.com/paper/2406.15877/) (2024)
- [Asleep at the Keyboard? Assessing the Security of GitHub Copilot's Code Contributions](https://mlsanity.com/paper/2108.09293/) (2021)
- [Agentless: Demystifying LLM-based Software Engineering Agents](https://mlsanity.com/paper/2407.01489/) (2024)
- [UniXcoder: Unified Cross-Modal Pre-training for Code Representation](https://mlsanity.com/paper/2203.03850/) (2022)
- [CodeT5+: Open Code Large Language Models for Code Understanding and Generation](https://mlsanity.com/paper/2305.07922/) (2023)
- [AutoCodeRover: Autonomous Program Improvement](https://mlsanity.com/paper/2404.05427/) (2024)
- [Devign: Effective Vulnerability Identification by Learning Comprehensive Program Semantics via Graph Neural Networks](https://mlsanity.com/paper/1909.03496/) (2019)
- [Do Users Write More Insecure Code with AI Assistants?](https://mlsanity.com/paper/2211.03622/) (2022)
- [Cybench: A Framework for Evaluating Cybersecurity Capabilities and Risks of Language Models](https://mlsanity.com/paper/2408.08926/) (2024)
- [Deep Learning based Vulnerability Detection: Are We There Yet?](https://mlsanity.com/paper/2009.07235/) (2020)
- [Vulnerability Detection with Code Language Models: How Far Are We?](https://mlsanity.com/paper/2403.18624/) (2024)
- [Purple Llama CyberSecEval: A Secure Coding Benchmark for Language Models](https://mlsanity.com/paper/2312.04724/) (2023)
- [SWT-Bench: Testing and Validating Real-World Bug-Fixes with Code Agents](https://mlsanity.com/paper/2406.12952/) (2024)
- [InferFix: End-to-End Program Repair with LLMs](https://mlsanity.com/paper/2303.07263/) (2023)
- [DiverseVul: A New Vulnerable Source Code Dataset for Deep Learning Based Vulnerability Detection](https://mlsanity.com/paper/2304.00409/) (2023)

## Built on by (most cited first, 1 of 1)

- [Uncertainty Quantification for LLM Agents: A Taxonomy, an Evaluation Protocol, and an Empirical Study](https://mlsanity.com/paper/2609.07395/) (2026)

## Abstract (arXiv)

Software vulnerabilities often depend on cross-file data flow, build options, framework conventions, and runtime guards, so isolated function classifiers produce fragile and poorly calibrated warnings. Repository-level LLM agents can gather richer evidence, but prior variants under-specify reproducibility, verifier behavior, baseline fairness, and statistical uncertainty. We present VulnAgent-R2, a budget-aware agentic auditing framework with three additional reusable modules: counterfactual evidence reweighting, build-aware verification-plan synthesis, and a cost-risk Pareto scheduler. The system combines graph triage, bounded context optimization, role-specialized agents, sceptic counter-evidence, selective dynamic verification, and calibrated fusion. On Devign, Big-Vul, DiverseVul, and PrimeVul, VulnAgent-R2 obtains 0.798/0.895, 0.739/0.871, 0.700/0.842, and 0.385/0.781 F1/AUROC, respectively. On JITVul it reaches 0.606 F1, 0.529 Top-1, and 0.742 Top-3 localization, while reducing online tokens by 38.3% over always-full multi-agent execution. Online time includes retrieval, LLM calls, CER scoring, verifier planning, compilation, and test execution, but excludes one-time shared indexing. Bootstrap tests show the PrimeVul gain over VulnAgent-X is +0.038 F1, 95% CI [0.020, 0.055], Holm-adjusted p=0.009. Treating vulnerability detection as calibrated evidence accumulation improves detection, localization, auditability, and cost control under the evaluated protocol, while remaining a prioritization aid rather than a replacement for manual review.Code is available at https://github.com/renweimeng/Vlun-Agent-X.