# Learning Hierarchical Knowledge in Text-Rich Networks with Taxonomy-Informed Representation Learning

arXiv: https://arxiv.org/abs/2603.08159 · HTML: https://mlsanity.com/paper/2603.08159/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 45 of its 80 references that are in the map.
- First posted on arXiv 9 Mar 2026.

## Builds on (most cited first, 30 of 45)

- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [A Simple Framework for Contrastive Learning of Visual Representations](https://mlsanity.com/paper/2002.05709/) (2020)
- [Semi-Supervised Classification with Graph Convolutional Networks](https://mlsanity.com/paper/1609.02907/) (2016)
- [Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks](https://mlsanity.com/paper/1908.10084/) (2019)
- [Graph Attention Networks](https://mlsanity.com/paper/1710.10903/) (2017)
- [Inductive Representation Learning on Large Graphs](https://mlsanity.com/paper/1706.02216/) (2017)
- [Distributed Representations of Words and Phrases and their Compositionality](https://mlsanity.com/paper/1310.4546/) (2013)
- [Open Graph Benchmark: Datasets for Machine Learning on Graphs](https://mlsanity.com/paper/2005.00687/) (2020)
- [Graph Retrieval-Augmented Generation: A Survey](https://mlsanity.com/paper/2408.08921/) (2024)
- [Provable Guarantees for Self-Supervised Deep Learning with Spectral Contrastive Loss](https://mlsanity.com/paper/2106.04156/) (2021)
- [Exploring the Potential of Large Language Models (LLMs) in Learning on Graphs](https://mlsanity.com/paper/2307.03393/) (2023)
- [One for All: Towards Training One Graph Model for All Classification Tasks](https://mlsanity.com/paper/2310.00149/) (2023)
- [GraphGPT: Graph Instruction Tuning for Large Language Models](https://mlsanity.com/paper/2310.13023/) (2023)
- [Large Language Models on Graphs: A Comprehensive Survey](https://mlsanity.com/paper/2312.02783/) (2023)
- [LLaGA: Large Language and Graph Assistant](https://mlsanity.com/paper/2402.08170/) (2024)
- [LLMRec: Large Language Models with Graph Augmentation for Recommendation](https://mlsanity.com/paper/2311.00423/) (2023)
- [Learning on Large-scale Text-attributed Graphs via Variational Inference](https://mlsanity.com/paper/2210.14709/) (2022)
- [GraphFormers: GNN-nested Transformers for Representation Learning on Textual Graph](https://mlsanity.com/paper/2105.02605/) (2021)
- [Node Feature Extraction by Self-Supervised Multi-scale Neighborhood Prediction](https://mlsanity.com/paper/2111.00064/) (2021)
- [A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery](https://mlsanity.com/paper/2406.10833/) (2024)
- [A Survey of Graph Meets Large Language Model: Progress and Future Directions](https://mlsanity.com/paper/2311.12399/) (2023)
- [Graph Neural Networks for Link Prediction with Subgraph Sketching](https://mlsanity.com/paper/2209.15486/) (2022)
- [Can GNN be Good Adapter for LLMs?](https://mlsanity.com/paper/2402.12984/) (2024)
- [Evaluating Graph Neural Networks for Link Prediction: Current Pitfalls and New Benchmarking](https://mlsanity.com/paper/2306.10453/) (2023)
- [Use All The Labels: A Hierarchical Multi-Label Contrastive Learning Framework](https://mlsanity.com/paper/2204.13207/) (2022)
- [GraphCLIP: Enhancing Transferability in Graph Foundation Models for Text-Attributed Graphs](https://mlsanity.com/paper/2410.10329/) (2024)
- [Efficient Tuning and Inference for Large Language Models on Textual Graphs](https://mlsanity.com/paper/2401.15569/) (2024)
- [Incorporating Hierarchy into Text Encoder: a Contrastive Learning Approach for Hierarchical Text Classification](https://mlsanity.com/paper/2203.03825/) (2022)
- [TaxoGen: Unsupervised Topic Taxonomy Construction by Adaptive Term Embedding and Clustering](https://mlsanity.com/paper/1812.09551/) (2018)
- [Patton: Language Model Pretraining on Text-Rich Networks](https://mlsanity.com/paper/2305.12268/) (2023)

## Built on by (most cited first, 1 of 1)

- [Beyond the Academic Monoculture: A Unified Framework and Industrial Perspective for Attributed Graph Clustering](https://mlsanity.com/paper/2603.20829/) (2026)

## Abstract (arXiv)

Hierarchical knowledge structures are ubiquitous across real-world domains and play a vital role in organizing information from coarse to fine semantic levels. While such structures have been widely used in taxonomy systems, biomedical ontologies, and retrieval-augmented generation, their potential remains underexplored in the context of Text-Rich Networks (TRNs), where each node contains rich textual content and edges encode semantic relationships. Existing methods for learning on TRNs often focus on flat semantic modeling, overlooking the inherent hierarchical semantics embedded in textual documents. To this end, we propose TIER (Hierarchical Taxonomy-Informed REpresentation Learning on Text-Rich Networks), which first constructs an implicit hierarchical taxonomy and then integrates it into the learned node representations. Specifically, TIER employs similarity-guided contrastive learning to build a clustering-friendly embedding space, upon which it performs hierarchical K-Means followed by LLM-powered clustering refinement to enable semantically coherent taxonomy construction. Leveraging the resulting taxonomy, TIER introduces a cophenetic correlation coefficient-based regularization loss to align the learned embeddings with the hierarchical structure. By learning representations that respect both fine-grained and coarse-grained semantics, TIER enables more interpretable and structured modeling of real-world TRNs. We demonstrate that our approach significantly outperforms existing methods on multiple datasets across diverse domains, highlighting the importance of hierarchical knowledge learning for TRNs.