# Governance Architecture for Autonomous Agent Systems: Threats, Framework, and Engineering Practice

arXiv: https://arxiv.org/abs/2603.07191 · HTML: https://mlsanity.com/paper/2603.07191/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Placed in Agent threats, guardrails and governance, one of 16 directions in LLM agents and tool use.
- Builds on 6 of its 20 references that are in the map.
- First posted on arXiv 7 Mar 2026.

## Placed in

- LLM agents and tool use / [Agent threats, guardrails and governance](https://mlsanity.com/agents/agent-threats-guardrails-and-governance/)
- LLM safety and security / [Prompt injection and agent security](https://mlsanity.com/safety/prompt-injection-and-agent-security/)

## Builds on (most cited first, 6 of 6)

- [Evaluating Large Language Models Trained on Code](https://mlsanity.com/paper/2107.03374/) (2021)
- [AutoGen: Enabling Next-Gen LLM Applications via Multi-Agent Conversation](https://mlsanity.com/paper/2308.08155/) (2023)
- [Llama Guard: LLM-based Input-Output Safeguard for Human-AI Conversations](https://mlsanity.com/paper/2312.06674/) (2023)
- [Ignore Previous Prompt: Attack Techniques For Language Models](https://mlsanity.com/paper/2211.09527/) (2022)
- [Identifying the Risks of LM Agents with an LM-Emulated Sandbox](https://mlsanity.com/paper/2309.15817/) (2023)
- [NeMo Guardrails: A Toolkit for Controllable and Safe LLM Applications with Programmable Rails](https://mlsanity.com/paper/2310.10501/) (2023)

## Built on by (most cited first, 2 of 2)

- [From Chatbot to Digital Colleague: The Paradigm Shift Toward Persistent Autonomous AI](https://mlsanity.com/paper/2606.14502/) (2026)
- [RT-SHCUA: Real-Time Self-Hosted Computer-Use Agent for UAV Control](https://mlsanity.com/paper/2607.17951/) (2026)

## Abstract (arXiv)

Autonomous agents powered by large language models introduce a class of execution-layer vulnerabilities -- prompt injection, retrieval poisoning, and uncontrolled tool invocation -- that existing guardrails fail to address systematically. In this work, we propose the Layered Governance Architecture (LGA), a four-layer framework comprising execution sandboxing (L1), intent verification (L2), zero-trust inter-agent authorization (L3), and immutable audit logging (L4). To evaluate LGA, we construct a bilingual benchmark (Chinese original, English via machine translation) of 1,081 tool-call samples -- covering prompt injection, RAG poisoning, and malicious skill plugins -- and apply it to OpenClaw, a representative open-source agent framework. Experimental results on Layer 2 intent verification with four local LLM judges (Qwen3.5-4B, Llama-3.1-8B, Qwen3.5-9B, Qwen2.5-14B) and one cloud judge (GPT-4o-mini) show that all five LLM judges intercept 93.0-98.5% of TC1/TC2 malicious tool calls, while lightweight NLI baselines remain below 10%. TC3 (malicious skill plugins) proves harder at 75-94% IR among judges with meaningful precision-recall balance, motivating complementary enforcement at Layers 1 and 3. Qwen2.5-14B achieves the best local balance (98% IR, approximately 10-20% FPR); a two-stage cascade (Qwen3.5-9B->GPT-4o-mini) achieves 91.9-92.6% IR with 1.9-6.7% FPR; a fully local cascade (Qwen3.5-9B->Qwen2.5-14B) achieves 94.7-95.6% IR with 6.0-9.7% FPR for data-sovereign deployments. An end-to-end pipeline evaluation (n=100) demonstrates that all four layers operate in concert with 96% IR and a total P50 latency of approximately 980 ms, of which the non-judge layers contribute only approximately 18 ms. Generalization to the external InjecAgent benchmark yields 99-100% interception, confirming robustness beyond our synthetic data.