# Prototype Transformer: Towards Language Model Architectures Interpretable by Design

arXiv: https://arxiv.org/abs/2602.11852 · HTML: https://mlsanity.com/paper/2602.11852/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Builds on 50 of its 63 references that are in the map.
- First posted on arXiv 12 Feb 2026.

## Builds on (most cited first, 30 of 50)

- [GPT-4 Technical Report](https://mlsanity.com/paper/2303.08774/) (2023)
- [The Llama 3 Herd of Models](https://mlsanity.com/paper/2407.21783/) (2024)
- [LLaMA: Open and Efficient Foundation Language Models](https://mlsanity.com/paper/2302.13971/) (2023)
- [Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks](https://mlsanity.com/paper/1908.10084/) (2019)
- [Qwen3 Technical Report](https://mlsanity.com/paper/2505.09388/) (2025)
- [GLUE: A Multi-Task Benchmark and Analysis Platform for Natural Language Understanding](https://mlsanity.com/paper/1804.07461/) (2018)
- [Mamba: Linear-Time Sequence Modeling with Selective State Spaces](https://mlsanity.com/paper/2312.00752/) (2023)
- [Pointer Sentinel Mixture Models](https://mlsanity.com/paper/1609.07843/) (2016)
- [Neural Machine Translation of Rare Words with Subword Units](https://mlsanity.com/paper/1508.07909/) (2015)
- [Locating and Editing Factual Associations in GPT](https://mlsanity.com/paper/2202.05262/) (2022)
- [Character-level Convolutional Networks for Text Classification](https://mlsanity.com/paper/1509.01626/) (2015)
- [GLU Variants Improve Transformer](https://mlsanity.com/paper/2002.05202/) (2020)
- [Root Mean Square Layer Normalization](https://mlsanity.com/paper/1910.07467/) (2019)
- [MiniLM: Deep Self-Attention Distillation for Task-Agnostic Compression of Pre-Trained Transformers](https://mlsanity.com/paper/2002.10957/) (2020)
- [Chatbot Arena: An Open Platform for Evaluating LLMs by Human Preference](https://mlsanity.com/paper/2403.04132/) (2024)
- [Interpretability in the Wild: a Circuit for Indirect Object Identification in GPT-2 small](https://mlsanity.com/paper/2211.00593/) (2022)
- [The FineWeb Datasets: Decanting the Web for the Finest Text Data at Scale](https://mlsanity.com/paper/2406.17557/) (2024)
- [Language Models Don't Always Say What They Think: Unfaithful Explanations in Chain-of-Thought Prompting](https://mlsanity.com/paper/2305.04388/) (2023)
- [BERT Rediscovers the Classical NLP Pipeline](https://mlsanity.com/paper/1905.05950/) (2019)
- [What Does BERT Look At? An Analysis of BERT's Attention](https://mlsanity.com/paper/1906.04341/) (2019)
- [Toy Models of Superposition](https://mlsanity.com/paper/2209.10652/) (2022)
- [Attention is not Explanation](https://mlsanity.com/paper/1902.10186/) (2019)
- [Object-Centric Learning with Slot Attention](https://mlsanity.com/paper/2006.15055/) (2020)
- [This Looks Like That: Deep Learning for Interpretable Image Recognition](https://mlsanity.com/paper/1806.10574/) (2018)
- [Towards Automated Circuit Discovery for Mechanistic Interpretability](https://mlsanity.com/paper/2304.14997/) (2023)
- [Siren's Song in the AI Ocean: A Survey on Hallucination in Large Language Models](https://mlsanity.com/paper/2309.01219/) (2023)
- [DailyDialog: A Manually Labelled Multi-turn Dialogue Dataset](https://mlsanity.com/paper/1710.03957/) (2017)
- [Perceiver IO: A General Architecture for Structured Inputs & Outputs](https://mlsanity.com/paper/2107.14795/) (2021)
- [Eliciting Latent Predictions from Transformers with the Tuned Lens](https://mlsanity.com/paper/2303.08112/) (2023)
- [Dissecting Recall of Factual Associations in Auto-Regressive Language Models](https://mlsanity.com/paper/2304.14767/) (2023)

## Built on by (most cited first, 2 of 2)

- [Collapse-Free Prototype Readout Layer for Transformer Encoders](https://mlsanity.com/paper/2604.03850/) (2026)
- [Graph Memory Transformer (GMT)](https://mlsanity.com/paper/2604.23862/) (2026)

## Abstract (arXiv)

While state-of-the-art language models (LMs) surpass most humans in certain domains, their reasoning remains largely opaque, reducing trust and increasing the risk of deception and hallucination. We introduce the Prototype Transformer (ProtoT), an autoregressive LM architecture that replaces the quadratic-cost self-attention module of the Transformer with a linear-cost module based on prototypes, which are learned parameter vectors. In ProtoT, prototypes create communication channels that aggregate contextual information at different time scales. We show that this structure leads prototypes to automatically capture nameable concepts, such as "woman", during training, offering a path toward interpreting model reasoning and making targeted edits to model behavior. Compared with baselines, ProtoT scales well with model and data size, is robust to input perturbations, and performs well on text generation and downstream tasks, including GLUE. These results suggest that ProtoT is a promising step toward autoregressive language models that are more interpretable by design.