# AgentSys: Secure and Dynamic LLM Agents Through Explicit Hierarchical Memory Management

arXiv: https://arxiv.org/abs/2602.07398 · HTML: https://mlsanity.com/paper/2602.07398/

## Key facts

- Cited by 10 papers in the map (data through 14 Oct 2026).
- Placed in Agent threats, guardrails and governance, one of 16 directions in LLM agents and tool use.
- Builds on 46 of its 59 references that are in the map.
- First posted on arXiv 7 Feb 2026.

## Placed in

- LLM agents and tool use / [Agent threats, guardrails and governance](https://mlsanity.com/agents/agent-threats-guardrails-and-governance/)
- LLM safety and security / [Prompt injection and agent security](https://mlsanity.com/safety/prompt-injection-and-agent-security/)

## Builds on (most cited first, 30 of 46)

- [ReAct: Synergizing Reasoning and Acting in Language Models](https://mlsanity.com/paper/2210.03629/) (2022)
- [Evaluating Large Language Models Trained on Code](https://mlsanity.com/paper/2107.03374/) (2021)
- [Lost in the Middle: How Language Models Use Long Contexts](https://mlsanity.com/paper/2307.03172/) (2023)
- [Universal and Transferable Adversarial Attacks on Aligned Language Models](https://mlsanity.com/paper/2307.15043/) (2023)
- [A Survey on Large Language Model based Autonomous Agents](https://mlsanity.com/paper/2308.11432/) (2023)
- [Jailbroken: How Does LLM Safety Training Fail?](https://mlsanity.com/paper/2307.02483/) (2023)
- [Not what you've signed up for: Compromising Real-World LLM-Integrated Applications with Indirect Prompt Injection](https://mlsanity.com/paper/2302.12173/) (2023)
- [Jailbreaking Black Box Large Language Models in Twenty Queries](https://mlsanity.com/paper/2310.08419/) (2023)
- [OSWorld: Benchmarking Multimodal Agents for Open-Ended Tasks in Real Computer Environments](https://mlsanity.com/paper/2404.07972/) (2024)
- [Ignore Previous Prompt: Attack Techniques For Language Models](https://mlsanity.com/paper/2211.09527/) (2022)
- [AutoDAN: Generating Stealthy Jailbreak Prompts on Aligned Large Language Models](https://mlsanity.com/paper/2310.04451/) (2023)
- [Prompt Injection attack against LLM-integrated Applications](https://mlsanity.com/paper/2306.05499/) (2023)
- [Understanding the planning of LLM agents: A survey](https://mlsanity.com/paper/2402.02716/) (2024)
- [StruQ: Defending Against Prompt Injection with Structured Queries](https://mlsanity.com/paper/2402.06363/) (2024)
- [Agent Security Bench (ASB): Formalizing and Benchmarking Attacks and Defenses in LLM-based Agents](https://mlsanity.com/paper/2410.02644/) (2024)
- [A Real-World WebAgent with Planning, Long Context Understanding, and Program Synthesis](https://mlsanity.com/paper/2307.12856/) (2023)
- [Defeating Prompt Injections by Design](https://mlsanity.com/paper/2503.18813/) (2025)
- [Defending Against Indirect Prompt Injection Attacks With Spotlighting](https://mlsanity.com/paper/2403.14720/) (2024)
- [Jailbreak Attacks and Defenses Against Large Language Models: A Survey](https://mlsanity.com/paper/2407.04295/) (2024)
- [SecAlign: Defending Against Prompt Injection with Preference Optimization](https://mlsanity.com/paper/2410.05451/) (2024)
- [Large Language Model Agent: A Survey on Methodology, Applications and Challenges](https://mlsanity.com/paper/2503.21460/) (2025)
- [EIA: Environmental Injection Attack on Generalist Web Agents for Privacy Leakage](https://mlsanity.com/paper/2409.11295/) (2024)
- [From LLM Reasoning to Autonomous AI Agents: A Comprehensive Review](https://mlsanity.com/paper/2504.19678/) (2025)
- [DataSentinel: A Game-Theoretic Detection of Prompt Injection Attacks](https://mlsanity.com/paper/2504.11358/) (2025)
- [Progent: Securing AI Agents with Privilege Control](https://mlsanity.com/paper/2504.11703/) (2025)
- [IsolateGPT: An Execution Isolation Architecture for LLM-Based Agentic Systems](https://mlsanity.com/paper/2403.04960/) (2024)
- [The Attacker Moves Second: Stronger Adaptive Attacks Bypass Defenses Against Llm Jailbreaks and Prompt Injections](https://mlsanity.com/paper/2510.09023/) (2025)
- [Adaptive Attacks Break Defenses Against Indirect Prompt Injection Attacks on LLM Agents](https://mlsanity.com/paper/2503.00061/) (2025)
- [PromptArmor: Simple yet Effective Prompt Injection Defenses](https://mlsanity.com/paper/2507.15219/) (2025)
- [Found in the Middle: Calibrating Positional Attention Bias Improves Long Context Utilization](https://mlsanity.com/paper/2406.16008/) (2024)

## Built on by (most cited first, 10 of 10)

- [Auditing Provenance Sensitivity in LLM Agent Action Selection](https://mlsanity.com/paper/2607.20827/) (2026)
- [The Verifier Tax: Horizon Dependent Safety Success Tradeoffs in Tool Using LLM Agents](https://mlsanity.com/paper/2603.19328/) (2026)
- [SafeAgent: A Runtime Protection Architecture for Agentic Systems](https://mlsanity.com/paper/2604.17562/) (2026)
- [Safeguarding LLM Agents against Long-Horizon Threats via Shadow Memory](https://mlsanity.com/paper/2605.03228/) (2026)
- [Toward Secure LLM Agents: Threat Surfaces, Attacks, Defenses, and Evaluation](https://mlsanity.com/paper/2606.10749/) (2026)
- [Trust No Tool: Evaluating and Defending LLM Agents under Untrusted Tool Feedback](https://mlsanity.com/paper/2605.17453/) (2026)
- [When Convenience Becomes Risk: A Semantic View of Under-Specification in Host-Acting Agents](https://mlsanity.com/paper/2603.21231/) (2026)
- [Security of OpenClaw Agents: Fundamentals, Attacks, and Countermeasures](https://mlsanity.com/paper/2605.25435/) (2026)
- [Ghost in the Context: Policy-Carriage Integrity in LLM Agents](https://mlsanity.com/paper/2605.12535/) (2026)
- [RT-SHCUA: Real-Time Self-Hosted Computer-Use Agent for UAV Control](https://mlsanity.com/paper/2607.17951/) (2026)

## Abstract (arXiv)

Indirect prompt injection threatens LLM agents by embedding malicious instructions in external content, enabling unauthorized actions and data theft. LLM agents maintain working memory through their context window, which stores interaction history for decision-making. Conventional agents indiscriminately accumulate all tool outputs and reasoning traces in this memory, creating two critical vulnerabilities: (1) injected instructions persist throughout the workflow, granting attackers multiple opportunities to manipulate behavior, and (2) verbose, non-essential content degrades decision-making capabilities. Existing defenses treat bloated memory as given and focus on remaining resilient, rather than reducing unnecessary accumulation to prevent the attack. We present AgentSys, a framework that defends against indirect prompt injection through explicit memory management. Inspired by process memory isolation in operating systems, AgentSys organizes agents hierarchically: a main agent spawns worker agents for tool calls, each running in an isolated context and able to spawn nested workers for subtasks. External data and subtask traces never enter the main agent's memory; only schema-validated return values can cross boundaries through deterministic JSON parsing. Ablations show isolation alone cuts attack success to 2.19%, and adding a validator/sanitizer further improves defense with event-triggered checks whose overhead scales with operations rather than context length. On AgentDojo and ASB, AgentSys achieves 0.78% and 4.25% attack success while slightly improving benign utility over undefended baselines. It remains robust to adaptive attackers and across multiple foundation models, showing that explicit memory management enables secure, dynamic LLM agent architectures. Our code is available at: https://github.com/ruoyaow/agentsys-memory.