# GraphVec: Cross-Domain Graph Vectorization for Graph-Level Representation Learning

arXiv: https://arxiv.org/abs/2602.04244 · HTML: https://mlsanity.com/paper/2602.04244/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 53 of its 85 references that are in the map.
- First posted on arXiv 4 Feb 2026.

## Builds on (most cited first, 30 of 53)

- [Semi-Supervised Classification with Graph Convolutional Networks](https://mlsanity.com/paper/1609.02907/) (2016)
- [Representation Learning with Contrastive Predictive Coding](https://mlsanity.com/paper/1807.03748/) (2018)
- [How Powerful are Graph Neural Networks?](https://mlsanity.com/paper/1810.00826/) (2018)
- [Neural Message Passing for Quantum Chemistry](https://mlsanity.com/paper/1704.01212/) (2017)
- [node2vec: Scalable Feature Learning for Networks](https://mlsanity.com/paper/1607.00653/) (2016)
- [Graph Contrastive Learning with Augmentations](https://mlsanity.com/paper/2010.13902/) (2020)
- [Deep Graph Infomax](https://mlsanity.com/paper/1809.10341/) (2018)
- [Revisiting Semi-Supervised Learning with Graph Embeddings](https://mlsanity.com/paper/1603.08861/) (2016)
- [Hierarchical Graph Representation Learning with Differentiable Pooling](https://mlsanity.com/paper/1806.08804/) (2018)
- [TUDataset: A collection of benchmark datasets for learning with graphs](https://mlsanity.com/paper/2007.08663/) (2020)
- [Recipe for a General, Powerful, Scalable Graph Transformer](https://mlsanity.com/paper/2205.12454/) (2022)
- [Spectrally-normalized margin bounds for neural networks](https://mlsanity.com/paper/1706.08498/) (2017)
- [Benchmarking Graph Neural Networks](https://mlsanity.com/paper/2003.00982/) (2020)
- [Equivariant Diffusion for Molecule Generation in 3D](https://mlsanity.com/paper/2203.17003/) (2022)
- [GCC: Graph Contrastive Coding for Graph Neural Network Pre-Training](https://mlsanity.com/paper/2006.09963/) (2020)
- [GraphMAE: Self-Supervised Masked Graph Autoencoders](https://mlsanity.com/paper/2205.10803/) (2022)
- [InfoGraph: Unsupervised and Semi-supervised Graph-Level Representation Learning via Mutual Information Maximization](https://mlsanity.com/paper/1908.01000/) (2019)
- [Graph Contrastive Learning Automated](https://mlsanity.com/paper/2106.07594/) (2021)
- [A Comprehensive Survey of Graph Embedding: Problems, Techniques and Applications](https://mlsanity.com/paper/1709.07604/) (2017)
- [Can Language Models Solve Graph Problems in Natural Language?](https://mlsanity.com/paper/2305.10037/) (2023)
- [One for All: Towards Training One Graph Model for All Classification Tasks](https://mlsanity.com/paper/2310.00149/) (2023)
- [Efficient Graph Generation with Graph Recurrent Attention Networks](https://mlsanity.com/paper/1910.00760/) (2019)
- [graph2vec: Learning Distributed Representations of Graphs](https://mlsanity.com/paper/1707.05005/) (2017)
- [GraphGPT: Graph Instruction Tuning for Large Language Models](https://mlsanity.com/paper/2310.13023/) (2023)
- [Talk like a Graph: Encoding Graphs for Large Language Models](https://mlsanity.com/paper/2310.04560/) (2023)
- [LLMRec: Large Language Models with Graph Augmentation for Recommendation](https://mlsanity.com/paper/2311.00423/) (2023)
- [SimGRACE: A Simple Framework for Graph Contrastive Learning without Data Augmentation](https://mlsanity.com/paper/2202.03104/) (2022)
- [GraphPrompt: Unifying Pre-Training and Downstream Tasks for Graph Neural Networks](https://mlsanity.com/paper/2302.08043/) (2023)
- [All in One: Multi-task Prompting for Graph Neural Networks](https://mlsanity.com/paper/2307.01504/) (2023)
- [GraphMAE2: A Decoding-Enhanced Masked Self-Supervised Graph Learner](https://mlsanity.com/paper/2304.04779/) (2023)

## Abstract (arXiv)

Learning universal graph representations across heterogeneous domains is difficult because graph datasets differ in topology, node-attribute semantics, feature dimensions, and even attribute availability. We propose GraphVec, a language-model-free graph vectorization model that maps diverse graphs into transferable fixed-dimensional embeddings for graph-level tasks. Instead of directly using incomparable raw node attributes, GraphVec constructs multi-scale global graphs over all nodes in each dataset and extracts spectral embeddings to obtain domain-agnostic relational features. To make these spectral features comparable across datasets, we introduce a density-maximization mean alignment algorithm over orthogonal transformations and prove its monotonic convergence. GraphVec further combines a GIN--Graph Transformer backbone with a multi-layer reference distribution module, which preserves node-level distributional information beyond standard pooling. We also provide a generalization error bound for the proposed model. Experiments on 13 datasets with more than 15 comparison methods demonstrate that GraphVec consistently outperforms strong graph pretraining baselines in cross-domain few-shot graph classification and graph clustering. Beyond graph-level tasks, GraphVec also yields strong node-level representations, achieving competitive performance on few-shot node classification against representative graph prompt learning methods.