# Toward Explaining Large Language Models in Software Engineering Tasks

arXiv: https://arxiv.org/abs/2512.20328 · HTML: https://mlsanity.com/paper/2512.20328/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 45 of its 69 references that are in the map.
- First posted on arXiv 23 Dec 2025.

## Builds on (most cited first, 30 of 45)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Evaluating Large Language Models Trained on Code](https://mlsanity.com/paper/2107.03374/) (2021)
- [A Unified Approach to Interpreting Model Predictions](https://mlsanity.com/paper/1705.07874/) (2017)
- [Efficient Memory Management for Large Language Model Serving with PagedAttention](https://mlsanity.com/paper/2309.06180/) (2023)
- ["Why Should I Trust You?": Explaining the Predictions of Any Classifier](https://mlsanity.com/paper/1602.04938/) (2016)
- [Code Llama: Open Foundation Models for Code](https://mlsanity.com/paper/2308.12950/) (2023)
- [CodeBERT: A Pre-Trained Model for Programming and Natural Languages](https://mlsanity.com/paper/2002.08155/) (2020)
- [Qwen2.5-Coder Technical Report](https://mlsanity.com/paper/2409.12186/) (2024)
- [DeepSeek-Coder: When the Large Language Model Meets Programming -- The Rise of Code Intelligence](https://mlsanity.com/paper/2401.14196/) (2024)
- [Tulu 3: Pushing Frontiers in Open Language Model Post-Training](https://mlsanity.com/paper/2411.15124/) (2024)
- [CodeT5: Identifier-aware Unified Pre-trained Encoder-Decoder Models for Code Understanding and Generation](https://mlsanity.com/paper/2109.00859/) (2021)
- [CodeXGLUE: A Machine Learning Benchmark Dataset for Code Understanding and Generation](https://mlsanity.com/paper/2102.04664/) (2021)
- [CodeSearchNet Challenge: Evaluating the State of Semantic Code Search](https://mlsanity.com/paper/1909.09436/) (2019)
- [GraphCodeBERT: Pre-training Code Representations with Data Flow](https://mlsanity.com/paper/2009.08366/) (2020)
- [BigCodeBench: Benchmarking Code Generation with Diverse Function Calls and Complex Instructions](https://mlsanity.com/paper/2406.15877/) (2024)
- [Phi-4-Mini Technical Report: Compact yet Powerful Multimodal Language Models via Mixture-of-LoRAs](https://mlsanity.com/paper/2503.01743/) (2025)
- [StarCoder 2 and The Stack v2: The Next Generation](https://mlsanity.com/paper/2402.19173/) (2024)
- [CodeBLEU: a Method for Automatic Evaluation of Code Synthesis](https://mlsanity.com/paper/2009.10297/) (2020)
- [Mechanistic Interpretability for AI Safety -- A Review](https://mlsanity.com/paper/2404.14082/) (2024)
- [UniXcoder: Unified Cross-Modal Pre-training for Code Representation](https://mlsanity.com/paper/2203.03850/) (2022)
- [An Empirical Evaluation of Using Large Language Models for Automated Unit Test Generation](https://mlsanity.com/paper/2302.06527/) (2023)
- [Towards Faithful Model Explanation in NLP: A Survey](https://mlsanity.com/paper/2209.11326/) (2022)
- [OpenCoder: The Open Cookbook for Top-Tier Code Large Language Models](https://mlsanity.com/paper/2411.04905/) (2024)
- [Few-shot training LLMs for project-specific code-summarization](https://mlsanity.com/paper/2207.04237/) (2022)
- [InferFix: End-to-End Program Repair with LLMs](https://mlsanity.com/paper/2303.07263/) (2023)
- [Automatic Semantic Augmentation of Language Model Prompts (for Code Summarization)](https://mlsanity.com/paper/2304.06815/) (2023)
- [OpenCodeInstruct: A Large-scale Instruction Tuning Dataset for Code LLMs](https://mlsanity.com/paper/2504.04030/) (2025)
- [CodeUltraFeedback: An LLM-as-a-Judge Dataset for Aligning Large Language Models to Coding Preferences](https://mlsanity.com/paper/2403.09032/) (2024)
- [Interpretability and Explainability: A Machine Learning Zoo Mini-tour](https://mlsanity.com/paper/2012.01805/) (2020)

## Abstract (arXiv)

Recent progress in Large Language Models (LLMs) has substantially advanced the automation of software engineering (SE) tasks, enabling complex activities such as code generation and code summarization. However, the black-box nature of LLMs remains a major barrier to their adoption in high-stakes and safety-critical domains, where explainability and transparency are vital for trust, accountability, and effective human supervision. Despite increasing interest in explainable AI for software engineering, existing methods lack domain-specific explanations aligned with how practitioners reason about SE artifacts. To address this gap, we introduce FeatureSHAP, the first fully automated, model-agnostic explainability framework tailored to software engineering tasks. Based on Shapley values, FeatureSHAP attributes model outputs to high-level input features through systematic input perturbation and task-specific similarity comparisons, while remaining compatible with both open-source and proprietary LLMs. We evaluate FeatureSHAP on two bi-modal SE tasks: code generation and code summarization. The results show that FeatureSHAP assigns less importance to irrelevant input features and produces explanations with higher fidelity than baseline methods. A practitioner survey involving 37 participants shows that FeatureSHAP helps practitioners better interpret model outputs and make more informed decisions. Collectively, FeatureSHAP represents a meaningful step toward practical explainable AI in software engineering. FeatureSHAP is available at https://github.com/deviserlab/FeatureSHAP.