# BioimageAIpub: a toolbox for AI-ready bioimaging data publishing

arXiv: https://arxiv.org/abs/2512.15820 · HTML: https://mlsanity.com/paper/2512.15820/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 0 of its 6 references that are in the map.
- First posted on arXiv 17 Dec 2025.

## Built on by (most cited first, 1 of 1)

- [FinInvest-GTCN: Explainable Graph-Temporal-Causal Modeling for Risk-Aware Investment Decision Optimization](https://mlsanity.com/paper/2606.28933/) (2026)

## Abstract (arXiv)

Modern bioimage analysis approaches are data hungry, making it necessary for researchers to scavenge data beyond those collected within their (bio)imaging facilities. In addition to scale, bioimaging datasets must be accompanied with suitable, high-quality annotations and metadata. Although established data repositories such as the Image Data Resource (IDR) and BioImage Archive offer rich metadata, their contents typically cannot be directly consumed by image analysis tools without substantial data wrangling. Such a tedious assembly and conversion of (meta)data can account for a dedicated amount of time investment for researchers, hindering the development of more powerful analysis tools. Here, we introduce BioimageAIpub, a workflow that streamlines bioimaging data conversion, enabling a seamless upload to HuggingFace, a widely used platform for sharing machine learning datasets and models.