# ST-DETrack: Identity-Preserving Branch Tracking in Entangled Plant Canopies via Dual Spatiotemporal Evidence

arXiv: https://arxiv.org/abs/2512.15445 · HTML: https://mlsanity.com/paper/2512.15445/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 21 of its 42 references that are in the map.
- First posted on arXiv 17 Dec 2025.

## Builds on (most cited first, 21 of 21)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [Adam: A Method for Stochastic Optimization](https://mlsanity.com/paper/1412.6980/) (2014)
- [An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale](https://mlsanity.com/paper/2010.11929/) (2020)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Microsoft COCO: Common Objects in Context](https://mlsanity.com/paper/1405.0312/) (2014)
- [End-to-End Object Detection with Transformers](https://mlsanity.com/paper/2005.12872/) (2020)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Masked-attention Mask Transformer for Universal Image Segmentation](https://mlsanity.com/paper/2112.01527/) (2021)
- [FiLM: Visual Reasoning with a General Conditioning Layer](https://mlsanity.com/paper/1709.07871/) (2017)
- [Simple Online and Realtime Tracking with a Deep Association Metric](https://mlsanity.com/paper/1703.07402/) (2017)
- [ByteTrack: Multi-Object Tracking by Associating Every Detection Box](https://mlsanity.com/paper/2110.06864/) (2021)
- [MOT16: A Benchmark for Multi-Object Tracking](https://mlsanity.com/paper/1603.00831/) (2016)
- [TrackFormer: Multi-Object Tracking with Transformers](https://mlsanity.com/paper/2101.02702/) (2021)
- [YOLACT: Real-time Instance Segmentation](https://mlsanity.com/paper/1904.02689/) (2019)
- [TransTrack: Multiple Object Tracking with Transformer](https://mlsanity.com/paper/2012.15460/) (2020)
- [MOT20: A benchmark for multi object tracking in crowded scenes](https://mlsanity.com/paper/2003.09003/) (2020)
- [Mask DINO: Towards A Unified Transformer-based Framework for Object Detection and Segmentation](https://mlsanity.com/paper/2206.02777/) (2022)
- [YOLOv12: Attention-Centric Real-Time Object Detectors](https://mlsanity.com/paper/2502.12524/) (2025)
- [Simple Does It: Weakly Supervised Instance and Semantic Segmentation](https://mlsanity.com/paper/1603.07485/) (2016)
- [Deep Leaf Segmentation Using Synthetic Data](https://mlsanity.com/paper/1807.10931/) (2018)
- [SAM-CP: Marrying SAM with Composable Prompts for Versatile Segmentation](https://mlsanity.com/paper/2407.16682/) (2024)

## Abstract (arXiv)

Automated extraction of individual plant branches from time-series imagery is essential for high-throughput phenotyping, yet it remains computationally challenging due to non-rigid growth dynamics and severe identity fragmentation within entangled canopies. To overcome these stage-dependent ambiguities, we propose ST-DETrack, a spatiotemporal-fusion dual-decoder network designed to preserve branch identity from budding to flowering. Our architecture integrates a spatial decoder, which leverages geometric priors such as position and angle for early-stage tracking, with a temporal decoder that exploits motion consistency to resolve late-stage occlusions. Crucially, an adaptive gating mechanism dynamically shifts reliance between these spatial and temporal cues, while a biological constraint based on negative gravitropism mitigates vertical growth ambiguities. Validated on a Brassica napus dataset, ST-DETrack achieves a Branch Matching Accuracy (BMA) of 93.6%, significantly outperforming spatial and temporal baselines by 28.9 and 3.3 percentage points, respectively. These results demonstrate the method's robustness in maintaining long-term identity consistency amidst complex, dynamic plant architectures.