# Toward Content-based Indexing and Retrieval of Head and Neck CT with Abscess Segmentation

arXiv: https://arxiv.org/abs/2512.01589 · HTML: https://mlsanity.com/paper/2512.01589/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 20 of its 49 references that are in the map.
- First posted on arXiv 1 Dec 2025.

## Builds on (most cited first, 20 of 20)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Swin Transformer: Hierarchical Vision Transformer using Shifted Windows](https://mlsanity.com/paper/2103.14030/) (2021)
- [Mamba: Linear-Time Sequence Modeling with Selective State Spaces](https://mlsanity.com/paper/2312.00752/) (2023)
- [TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation](https://mlsanity.com/paper/2102.04306/) (2021)
- [UNet++: A Nested U-Net Architecture for Medical Image Segmentation](https://mlsanity.com/paper/1807.10165/) (2018)
- [VMamba: Visual State Space Model](https://mlsanity.com/paper/2401.10166/) (2024)
- [UNETR: Transformers for 3D Medical Image Segmentation](https://mlsanity.com/paper/2103.10504/) (2021)
- [Swin UNETR: Swin Transformers for Semantic Segmentation of Brain Tumors in MRI Images](https://mlsanity.com/paper/2201.01266/) (2022)
- [MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification](https://mlsanity.com/paper/2110.14795/) (2021)
- [MedCLIP: Contrastive Learning from Unpaired Medical Images and Text](https://mlsanity.com/paper/2210.10163/) (2022)
- [U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation](https://mlsanity.com/paper/2401.04722/) (2024)
- [The Faiss library](https://mlsanity.com/paper/2401.08281/) (2024)
- [VM-UNet: Vision Mamba UNet for Medical Image Segmentation](https://mlsanity.com/paper/2402.02491/) (2024)
- [ResUNet-a: a deep learning framework for semantic segmentation of remotely sensed data](https://mlsanity.com/paper/1904.00592/) (2019)
- [ResUNet++: An Advanced Architecture for Medical Image Segmentation](https://mlsanity.com/paper/1911.07067/) (2019)
- [Swin-UMamba: Mamba-based UNet with ImageNet-based pretraining](https://mlsanity.com/paper/2402.03302/) (2024)
- [Common Limitations of Image Processing Metrics: A Picture Story](https://mlsanity.com/paper/2104.05642/) (2021)
- [SegRap2023: A Benchmark of Organs-at-Risk and Gross Tumor Volume Segmentation for Radiotherapy Planning of Nasopharyngeal Carcinoma](https://mlsanity.com/paper/2312.09576/) (2023)
- [Retrieval-augmented Few-shot Medical Image Segmentation with Foundation Models](https://mlsanity.com/paper/2408.08813/) (2024)

## Abstract (arXiv)

Abscesses in the head and neck represent an acute infectious process that can potentially lead to sepsis or mortality if not diagnosed and managed promptly. Accurate detection and delineation of these lesions on imaging are essential for diagnosis, treatment planning, and surgical intervention. In this study, we introduce AbscessHeNe, a curated and comprehensively annotated dataset comprising 4,926 contrast-enhanced CT slices with clinically confirmed head and neck abscesses. The dataset is designed to facilitate the development of robust semantic segmentation models that can accurately delineate abscess boundaries and evaluate deep neck space involvement, thereby supporting informed clinical decision-making. To establish performance baselines, we evaluate several state-of-the-art segmentation architectures, including CNN, Transformer, and Mamba-based models. The highest-performing model achieved a Dice Similarity Coefficient of 0.39, Intersection-over-Union of 0.27, and Normalized Surface Distance of 0.67, indicating the challenges of this task and the need for further research. Beyond segmentation, AbscessHeNe is structured for future applications in content-based multimedia indexing and case-based retrieval. Each CT scan is linked with pixel-level annotations and clinical metadata, providing a foundation for building intelligent retrieval systems and supporting knowledge-driven clinical workflows. The dataset will be made publicly available at https://github.com/drthaodao3101/AbscessHeNe.git.