# E2E-GRec: An End-to-End Joint Training Framework for Graph Neural Networks and Recommender Systems

arXiv: https://arxiv.org/abs/2511.20564 · HTML: https://mlsanity.com/paper/2511.20564/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 16 of its 40 references that are in the map.
- First posted on arXiv 25 Nov 2025.

## Builds on (most cited first, 16 of 16)

- [Graph Attention Networks](https://mlsanity.com/paper/1710.10903/) (2017)
- [Inductive Representation Learning on Large Graphs](https://mlsanity.com/paper/1706.02216/) (2017)
- [XGBoost: A Scalable Tree Boosting System](https://mlsanity.com/paper/1603.02754/) (2016)
- [Simplifying Graph Convolutional Networks](https://mlsanity.com/paper/1902.07153/) (2019)
- [LightGCN: Simplifying and Powering Graph Convolution Network for Recommendation](https://mlsanity.com/paper/2002.02126/) (2020)
- [Graph Convolutional Neural Networks for Web-Scale Recommender Systems](https://mlsanity.com/paper/1806.01973/) (2018)
- [GradNorm: Gradient Normalization for Adaptive Loss Balancing in Deep Multitask Networks](https://mlsanity.com/paper/1711.02257/) (2017)
- [Neural Graph Collaborative Filtering](https://mlsanity.com/paper/1905.08108/) (2019)
- [Graph Neural Networks in Recommender Systems: A Survey](https://mlsanity.com/paper/2011.02260/) (2020)
- [DistDGL: Distributed Graph Neural Network Training for Billion-Scale Graphs](https://mlsanity.com/paper/2010.05337/) (2020)
- [Billion-scale Commodity Embedding for E-commerce Recommendation in Alibaba](https://mlsanity.com/paper/1803.02349/) (2018)
- [UltraGCN: Ultra Simplification of Graph Convolutional Networks for Recommendation](https://mlsanity.com/paper/2110.15114/) (2021)
- [Linear-Time Graph Neural Networks for Scalable Recommendations](https://mlsanity.com/paper/2402.13973/) (2024)
- [Large Scale Product Graph Construction for Recommendation in E-commerce](https://mlsanity.com/paper/2010.05525/) (2020)
- [Knowing your FATE: Friendship, Action and Temporal Explanations for User Engagement Prediction on Social Apps](https://mlsanity.com/paper/2006.06427/) (2020)
- [Graph Intention Network for Click-through Rate Prediction in Sponsored Search](https://mlsanity.com/paper/2103.16164/) (2021)

## Abstract (arXiv)

Graph Neural Networks (GNNs) have emerged as powerful tools for modeling graph-structured data and have been widely used in recommender systems, such as for capturing complex user-item and item-item relations. However, most industrial deployments adopt a two-stage pipeline: GNNs are first pre-trained offline to generate node embeddings, which are then used as static features for downstream recommender systems. This decoupled paradigm leads to two key limitations: (1) high computational overhead, since large-scale GNN inference must be repeatedly executed to refresh embeddings; and (2) lack of joint optimization, as the gradient from the recommender system cannot directly influence the GNN learning process, causing the GNN to be suboptimally informative for the recommendation task. In this paper, we propose E2E-GRec, a novel end-to-end training framework that unifies GNN training with the recommender system. Our framework is characterized by three key components: (i) efficient subgraph sampling from a large-scale cross-domain heterogeneous graph to ensure training scalability and efficiency; (ii) a Graph Feature Auto-Encoder (GFAE) serving as an auxiliary self-supervised task to guide the GNN to learn structurally meaningful embeddings; and (iii) a two-level feature fusion mechanism combined with Gradnorm-based dynamic loss balancing, which stabilizes graph-aware multi-task end-to-end training. Extensive offline evaluations, online A/B tests (e.g., a +0.133% relative improvement in stay duration, a 0.3171% reduction in the average number of videos a user skips) on large-scale production data, together with theoretical analysis, demonstrate that E2E-GRec consistently surpasses traditional approaches, yielding significant gains across multiple recommendation metrics.