# ProM3E: Probabilistic Masked MultiModal Embedding Model for Ecology

arXiv: https://arxiv.org/abs/2511.02946 · HTML: https://mlsanity.com/paper/2511.02946/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 70 of its 81 references that are in the map.
- First posted on arXiv 4 Nov 2025.

## Builds on (most cited first, 30 of 70)

- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Learning Transferable Visual Models From Natural Language Supervision](https://mlsanity.com/paper/2103.00020/) (2021)
- [RoBERTa: A Robustly Optimized BERT Pretraining Approach](https://mlsanity.com/paper/1907.11692/) (2019)
- [Masked Autoencoders Are Scalable Vision Learners](https://mlsanity.com/paper/2111.06377/) (2021)
- [UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction](https://mlsanity.com/paper/1802.03426/) (2018)
- [Supervised Contrastive Learning](https://mlsanity.com/paper/2004.11362/) (2020)
- [ALBERT: A Lite BERT for Self-supervised Learning of Language Representations](https://mlsanity.com/paper/1909.11942/) (2019)
- [VideoMAE: Masked Autoencoders are Data-Efficient Learners for Self-Supervised Video Pre-Training](https://mlsanity.com/paper/2203.12602/) (2022)
- [ImageBind: One Embedding Space To Bind Them All](https://mlsanity.com/paper/2305.05665/) (2023)
- [SimMIM: A Simple Framework for Masked Image Modeling](https://mlsanity.com/paper/2111.09886/) (2021)
- [Self-Supervised Learning from Images with a Joint-Embedding Predictive Architecture](https://mlsanity.com/paper/2301.08243/) (2023)
- [Vision Transformers Need Registers](https://mlsanity.com/paper/2309.16588/) (2023)
- [NExT-GPT: Any-to-Any Multimodal LLM](https://mlsanity.com/paper/2309.05519/) (2023)
- [Masked Feature Prediction for Self-Supervised Visual Pre-Training](https://mlsanity.com/paper/2112.09133/) (2021)
- [Mind the Gap: Understanding the Modality Gap in Multi-modal Contrastive Representation Learning](https://mlsanity.com/paper/2203.02053/) (2022)
- [VATT: Transformers for Multimodal Self-Supervised Learning from Raw Video, Audio and Text](https://mlsanity.com/paper/2104.11178/) (2021)
- [Unified-IO: A Unified Model for Vision, Language, and Multi-Modal Tasks](https://mlsanity.com/paper/2206.08916/) (2022)
- [AudioCLIP: Extending CLIP to Image, Text and Audio](https://mlsanity.com/paper/2106.13043/) (2021)
- [MultiMAE: Multi-modal Multi-task Masked Autoencoders](https://mlsanity.com/paper/2204.01678/) (2022)
- [GeoCLIP: Clip-Inspired Alignment between Locations and Images for Effective Worldwide Geo-localization](https://mlsanity.com/paper/2309.16020/) (2023)
- [OneLLM: One Framework to Align All Modalities with Language](https://mlsanity.com/paper/2312.03700/) (2023)
- [BioCLIP: A Vision Foundation Model for the Tree of Life](https://mlsanity.com/paper/2311.18803/) (2023)
- [SatCLIP: Global, General-Purpose Location Embeddings with Satellite Imagery](https://mlsanity.com/paper/2311.17179/) (2023)
- [4M: Massively Multimodal Masked Modeling](https://mlsanity.com/paper/2312.06647/) (2023)
- [ONE-PEACE: Exploring One General Representation Model Toward Unlimited Modalities](https://mlsanity.com/paper/2305.11172/) (2023)
- [Presence-Only Geographical Priors for Fine-Grained Image Classification](https://mlsanity.com/paper/1906.05272/) (2019)
- [Neural Plasticity-Inspired Multimodal Foundation Model for Earth Observation](https://mlsanity.com/paper/2403.15356/) (2024)
- [Binding Touch to Everything: Learning Unified Multimodal Tactile Representations](https://mlsanity.com/paper/2401.18084/) (2024)
- [AnySat: One Earth Observation Model for Many Resolutions, Scales, and Modalities](https://mlsanity.com/paper/2412.14123/) (2024)
- [Remote Sensing Vision-Language Foundation Models without Annotations via Ground Remote Alignment](https://mlsanity.com/paper/2312.06960/) (2023)

## Built on by (most cited first, 1 of 1)

- [MODUS: Decoder-Only Any-to-Any Modeling of Diverse Modalities](https://mlsanity.com/paper/2607.25948/) (2026)

## Abstract (arXiv)

We introduce ProM3E, a probabilistic masked multimodal embedding model for any-to-any generation of multimodal representations for ecology. ProM3E is based on masked modality reconstruction in the embedding space, learning to infer missing modalities given a few context modalities. By design, our model supports modality inversion in the embedding space. The probabilistic nature of our model allows us to analyse the feasibility of fusing various modalities for given downstream tasks, essentially learning what to fuse. Using these features of our model, we propose a novel cross-modal retrieval approach that mixes inter-modal and intra-modal similarities to achieve superior performance across all retrieval tasks. We further leverage the hidden representation from our model to perform linear probing tasks and demonstrate the superior representation learning capability of our model. All our code, datasets and model will be released at https://vishu26.github.io/prom3e.