# A Biophysically-Conditioned Generative Framework for 3D Brain Tumor MRI Synthesis

arXiv: https://arxiv.org/abs/2510.09365 · HTML: https://mlsanity.com/paper/2510.09365/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 12 of its 22 references that are in the map.
- First posted on arXiv 10 Oct 2025.

## Builds on (most cited first, 12 of 12)

- [Denoising Diffusion Probabilistic Models](https://mlsanity.com/paper/2006.11239/) (2020)
- [High-Resolution Image Synthesis with Latent Diffusion Models](https://mlsanity.com/paper/2112.10752/) (2021)
- [Adding Conditional Control to Text-to-Image Diffusion Models](https://mlsanity.com/paper/2302.05543/) (2023)
- [The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification](https://mlsanity.com/paper/2107.02314/) (2021)
- [MONAI: An open-source framework for deep learning in healthcare](https://mlsanity.com/paper/2211.02701/) (2022)
- [MAISI: Medical AI for Synthetic Imaging](https://mlsanity.com/paper/2409.11169/) (2024)
- [Conditional Diffusion Models for Semantic 3D Brain MRI Synthesis](https://mlsanity.com/paper/2305.18453/) (2023)
- [The Swiss Army Knife for Image-to-Image Translation: Multi-Task Diffusion Models](https://mlsanity.com/paper/2204.02641/) (2022)
- [Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling](https://mlsanity.com/paper/2111.04090/) (2021)
- [Treatment-aware Diffusion Probabilistic Model for Longitudinal MRI Generation and Diffuse Glioma Growth Prediction](https://mlsanity.com/paper/2309.05406/) (2023)
- [A Learnable Prior Improves Inverse Tumor Growth Modeling](https://mlsanity.com/paper/2403.04500/) (2024)
- [Physics-Regularized Multi-Modal Image Assimilation for Brain Tumor Localization](https://mlsanity.com/paper/2409.20409/) (2024)

## Abstract (arXiv)

Magnetic resonance imaging (MRI) inpainting supports numerous clinical and research applications. We introduce the first generative model that conditions on voxel-level, continuous tumor concentrations to synthesize high-fidelity brain tumor MRIs. For the BraTS 2025 Inpainting Challenge, we adapt this architecture to the complementary task of healthy tissue restoration by setting the tumor concentrations to zero. Our latent diffusion model conditioned on both tissue segmentations and the tumor concentrations generates 3D spatially coherent and anatomically consistent images for both tumor synthesis and healthy tissue inpainting. For healthy inpainting, we achieve a PSNR of 18.5, and for tumor inpainting, we achieve 17.4. Our code is available at: https://github.com/valentin-biller/ldm.git