# BrainPro: Towards Large-scale Brain State-aware EEG Representation Learning

arXiv: https://arxiv.org/abs/2509.22050 · HTML: https://mlsanity.com/paper/2509.22050/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Builds on 13 of its 59 references that are in the map.
- First posted on arXiv 26 Sep 2025.

## Builds on (most cited first, 13 of 13)

- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [Learning Transferable Visual Models From Natural Language Supervision](https://mlsanity.com/paper/2103.00020/) (2021)
- [Masked Autoencoders Are Scalable Vision Learners](https://mlsanity.com/paper/2111.06377/) (2021)
- [EEGNet: A Compact Convolutional Network for EEG-based Brain-Computer Interfaces](https://mlsanity.com/paper/1611.08024/) (2016)
- [Large Brain Model for Learning Generic Representations with Tremendous EEG Data in BCI](https://mlsanity.com/paper/2405.18765/) (2024)
- [CBraMod: A Criss-Cross Brain Foundation Model for EEG Decoding](https://mlsanity.com/paper/2412.07236/) (2024)
- [EEG-Based Emotion Recognition Using Regularized Graph Neural Networks](https://mlsanity.com/paper/1907.07835/) (2019)
- [The Temple University Hospital Seizure Detection Corpus](https://mlsanity.com/paper/1801.08085/) (2018)
- [Neuro-GPT: Towards A Foundation Model for EEG](https://mlsanity.com/paper/2311.03764/) (2023)
- [TSception: Capturing Temporal Dynamics and Spatial Asymmetry from EEG for Emotion Recognition](https://mlsanity.com/paper/2104.02935/) (2021)
- [LGGNet: Learning from Local-Global-Graph Representations for Brain-Computer Interface](https://mlsanity.com/paper/2105.02786/) (2021)
- [EEG-Deformer: A Dense Convolutional Transformer for Brain-computer Interfaces](https://mlsanity.com/paper/2405.00719/) (2024)
- [Prediction of Reaction Time and Vigilance Variability from Spatiospectral Features of Resting-State EEG in a Long Sustained Attention Task](https://mlsanity.com/paper/1910.10076/) (2019)

## Built on by (most cited first, 2 of 2)

- [EvoBrain: Continual Learning of EEG Foundation Models Across Heterogeneous BCI Tasks](https://mlsanity.com/paper/2606.01767/) (2026)
- [DEFT: Disentanglement-Enhanced Fine-Tuning for EEG Foundation Models](https://mlsanity.com/paper/2610.14497/) (2026)

## Abstract (arXiv)

Electroencephalography (EEG) reflects underlying brain states, whose activities are distributed across brain regions and manifest as spatial patterns on the scalp. Learning these spatially structured, state-related patterns requires consistent spatial representations across datasets. However, existing EEG foundation models are typically based on self-attention, which does not preserve location-specific information and struggles to align signals recorded with different channel configurations. Moreover, brain states contain both shared and state-specific regional activity, suggesting that learning neurophysiologically plausible, state-aware representations can complement the shared representations targeted by current models and improve downstream decoding. To address these limitations, we propose BrainPro, a large EEG model that combines a retrieval-based spatial learning mechanism for cross-layout spatial alignment with a brain state-decoupling module that learns both shared and state-specific representations through parallel encoders and region-aware reconstruction. Pre-trained on a large EEG corpus, BrainPro achieves state-of-the-art performance across nine public BCI datasets spanning emotion, motor, speech, stress, mental disease, and attention tasks. Analyses of spatial filters, channel-drop robustness, and encoder contributions further validate the effectiveness of its spatial alignment and state-aware pathways. These results show that BrainPro achieves improved interpretability of learned spatial patterns and produces representations that benefit diverse EEG decoding tasks.