# nDNA -- the Semantic Helix of Artificial Cognition

arXiv: https://arxiv.org/abs/2509.18216 · HTML: https://mlsanity.com/paper/2509.18216/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 68 of its 169 references that are in the map.
- First posted on arXiv 21 Sep 2025.

## Builds on (most cited first, 30 of 68)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [High-Resolution Image Synthesis with Latent Diffusion Models](https://mlsanity.com/paper/2112.10752/) (2021)
- [Training language models to follow instructions with human feedback](https://mlsanity.com/paper/2203.02155/) (2022)
- [LLaMA: Open and Efficient Foundation Language Models](https://mlsanity.com/paper/2302.13971/) (2023)
- [Distilling the Knowledge in a Neural Network](https://mlsanity.com/paper/1503.02531/) (2015)
- [Training Verifiers to Solve Math Word Problems](https://mlsanity.com/paper/2110.14168/) (2021)
- [Scaling Laws for Neural Language Models](https://mlsanity.com/paper/2001.08361/) (2020)
- [SQuAD: 100,000+ Questions for Machine Comprehension of Text](https://mlsanity.com/paper/1606.05250/) (2016)
- [HellaSwag: Can a Machine Really Finish Your Sentence?](https://mlsanity.com/paper/1905.07830/) (2019)
- [On the Opportunities and Risks of Foundation Models](https://mlsanity.com/paper/2108.07258/) (2021)
- [Unsupervised Cross-lingual Representation Learning at Scale](https://mlsanity.com/paper/1911.02116/) (2019)
- [GLIDE: Towards Photorealistic Image Generation and Editing with Text-Guided Diffusion Models](https://mlsanity.com/paper/2112.10741/) (2021)
- [Distributed Representations of Words and Phrases and their Compositionality](https://mlsanity.com/paper/1310.4546/) (2013)
- [Lost in the Middle: How Language Models Use Long Contexts](https://mlsanity.com/paper/2307.03172/) (2023)
- [Longformer: The Long-Document Transformer](https://mlsanity.com/paper/2004.05150/) (2020)
- [RT-2: Vision-Language-Action Models Transfer Web Knowledge to Robotic Control](https://mlsanity.com/paper/2307.15818/) (2023)
- [Constitutional AI: Harmlessness from AI Feedback](https://mlsanity.com/paper/2212.08073/) (2022)
- [Training Compute-Optimal Large Language Models](https://mlsanity.com/paper/2203.15556/) (2022)
- [TriviaQA: A Large Scale Distantly Supervised Challenge Dataset for Reading Comprehension](https://mlsanity.com/paper/1705.03551/) (2017)
- [Sparks of Artificial General Intelligence: Early experiments with GPT-4](https://mlsanity.com/paper/2303.12712/) (2023)
- [Emergent Abilities of Large Language Models](https://mlsanity.com/paper/2206.07682/) (2022)
- [Do As I Can, Not As I Say: Grounding Language in Robotic Affordances](https://mlsanity.com/paper/2204.01691/) (2022)
- [Deep contextualized word representations](https://mlsanity.com/paper/1802.05365/) (2018)
- [The Lottery Ticket Hypothesis: Finding Sparse, Trainable Neural Networks](https://mlsanity.com/paper/1803.03635/) (2018)
- [PaLM-E: An Embodied Multimodal Language Model](https://mlsanity.com/paper/2303.03378/) (2023)
- [BLOOM: A 176B-Parameter Open-Access Multilingual Language Model](https://mlsanity.com/paper/2211.05100/) (2022)
- [CommonsenseQA: A Question Answering Challenge Targeting Commonsense Knowledge](https://mlsanity.com/paper/1811.00937/) (2018)
- [FitNets: Hints for Thin Deep Nets](https://mlsanity.com/paper/1412.6550/) (2014)
- [Model soups: averaging weights of multiple fine-tuned models improves accuracy without increasing inference time](https://mlsanity.com/paper/2203.05482/) (2022)

## Abstract (arXiv)

As AI foundation models grow in capability, a deeper question emerges: What shapes their internal cognitive identity -- beyond fluency and output? Benchmarks measure behavior, but the soul of a model resides in its latent geometry. In this work, we propose Neural DNA (nDNA) as a semantic-genotypic representation that captures this latent identity through the intrinsic geometry of belief. At its core, nDNA is synthesized from three principled and indispensable dimensions of latent geometry: spectral curvature, which reveals the curvature of conceptual flow across layers; thermodynamic length, which quantifies the semantic effort required to traverse representational transitions through layers; and belief vector field, which delineates the semantic torsion fields that guide a model's belief directional orientations. Like biological DNA, it encodes ancestry, mutation, and semantic inheritance, found in finetuning and alignment scars, cultural imprints, and architectural drift. In naming it, we open a new field: Neural Genomics, where models are not just tools, but digital semantic organisms with traceable inner cognition. Modeling statement. We read AI foundation models as semantic fluid dynamics: meaning is transported through layers like fluid in a shaped conduit; nDNA is the physics-grade readout of that flow -- a geometry-first measure of how meaning is bent, paid for, and pushed -- yielding a stable, coordinate-free neural DNA fingerprint tied to on-input behavior; with this fingerprint we cross into biology: tracing lineages across pretraining, fine-tuning, alignment, pruning, distillation, and merges; measuring inheritance between checkpoints; detecting drift as traits shift under new data or objectives; and, ultimately, studying the evolution of artificial cognition to compare models, diagnose risks, and govern change over time.