# End-to-End Learning of Multi-Organ Implicit Surfaces from 3D Medical Imaging Data

arXiv: https://arxiv.org/abs/2509.12068 · HTML: https://mlsanity.com/paper/2509.12068/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 16 of its 27 references that are in the map.
- First posted on arXiv 15 Sep 2025.

## Builds on (most cited first, 16 of 16)

- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation](https://mlsanity.com/paper/1612.00593/) (2016)
- [ShapeNet: An Information-Rich 3D Model Repository](https://mlsanity.com/paper/1512.03012/) (2015)
- [DeepSDF: Learning Continuous Signed Distance Functions for Shape Representation](https://mlsanity.com/paper/1901.05103/) (2019)
- [PIFu: Pixel-Aligned Implicit Function for High-Resolution Clothed Human Digitization](https://mlsanity.com/paper/1905.05172/) (2019)
- [Convolutional Occupancy Networks](https://mlsanity.com/paper/2003.04618/) (2020)
- [Neural Fields in Visual Computing and Beyond](https://mlsanity.com/paper/2111.11426/) (2021)
- [Implicit Functions in Feature Space for 3D Shape Reconstruction and Completion](https://mlsanity.com/paper/2003.01456/) (2020)
- [State of the Art on Neural Rendering](https://mlsanity.com/paper/2004.03805/) (2020)
- [Neural Unsigned Distance Fields for Implicit Function Learning](https://mlsanity.com/paper/2010.13938/) (2020)
- [Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data](https://mlsanity.com/paper/1912.03681/) (2019)
- [A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction](https://mlsanity.com/paper/2102.07899/) (2021)
- [Topology-Preserving Shape Reconstruction and Registration via Neural Diffeomorphic Flow](https://mlsanity.com/paper/2203.08652/) (2022)
- [Vox2Cortex: Fast Explicit Reconstruction of Cortical Surfaces from 3D MRI Scans with Geometric Deep Neural Networks](https://mlsanity.com/paper/2203.09446/) (2022)
- [Neural Annotation Refinement: Development of a New 3D Dataset for Adrenal Gland Analysis](https://mlsanity.com/paper/2206.15328/) (2022)
- [Implicit U-Net for volumetric medical image segmentation](https://mlsanity.com/paper/2206.15217/) (2022)

## Abstract (arXiv)

The fine-grained surface reconstruction of different organs from 3D medical imaging can provide advanced diagnostic support and improved surgical planning. However, the representation of the organs is often limited by the resolution, with a detailed higher resolution requiring more memory and computing footprint. Implicit representations of objects have been proposed to alleviate this problem in general computer vision by providing compact and differentiable functions to represent the 3D object shapes. However, architectural and data-related differences prevent the direct application of these methods to medical images. This work introduces ImplMORe, an end-to-end deep learning method using implicit surface representations for multi-organ reconstruction from 3D medical images. ImplMORe incorporates local features using a 3D CNN encoder and performs multi-scale interpolation to learn the features in the continuous domain using occupancy functions. We apply our method for single and multiple organ reconstructions using the totalsegmentator dataset. By leveraging the continuous nature of occupancy functions, our approach outperforms the discrete explicit representation based surface reconstruction approaches, providing fine-grained surface details of the organ at a resolution higher than the given input image. The source code will be made publicly available at: https://github.com/CAMMA-public/ImplMORe