# Enhanced Prediction of CAR T-Cell Cytotoxicity with Quantum-Kernel Methods

arXiv: https://arxiv.org/abs/2507.22710 · HTML: https://mlsanity.com/paper/2507.22710/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 4 of its 23 references that are in the map.
- First posted on arXiv 30 Jul 2025.

## Builds on (most cited first, 4 of 4)

- [Supervised learning with quantum enhanced feature spaces](https://mlsanity.com/paper/1804.11326/) (2018)
- [Power of data in quantum machine learning](https://mlsanity.com/paper/2011.01938/) (2020)
- [IBM Quantum Computers: Evolution, Performance, and Future Directions](https://mlsanity.com/paper/2410.00916/) (2024)
- [Hybrid quantum-classical graph neural networks for tumor classification in digital pathology](https://mlsanity.com/paper/2310.11353/) (2023)

## Abstract (arXiv)

Chimeric antigen receptor (CAR) T-cells are T-cells engineered to recognize and kill specific tumor cells. Through their extracellular domains, CAR T-cells bind tumor cell antigens which triggers CAR T activation and proliferation. These processes are regulated by co-stimulatory domains present in the intracellular region of the CAR T-cell. Through integrating novel signaling components into the co-stimulatory domains, it is possible to modify CAR T-cell phenotype. Identifying and experimentally testing new CAR constructs based on libraries of co-stimulatory domains is nontrivial given the vast combinatorial space defined by such libraries. This leads to a highly data constrained, poorly explored combinatorial problem, where the experiments undersample all possible combinations. We propose a quantum approach using a Projected Quantum Kernel (PQK) to address this challenge. PQK operates by embedding classical data into a high dimensional Hilbert space and employs a kernel method to measure sample similarity. Using 61 qubits on a gate-based quantum computer, we demonstrate the largest PQK application to date and an enhancement in the classification performance over purely classical machine learning methods for CAR T cytotoxicity prediction. Importantly, we show improved learning for specific signaling domains and domain positions, particularly where there was lower information highlighting the potential for quantum computing in data-constrained problems.