# Surg-SegFormer: A Dual Transformer-Based Model for Holistic Surgical Scene Segmentation

arXiv: https://arxiv.org/abs/2507.04304 · HTML: https://mlsanity.com/paper/2507.04304/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 15 of its 19 references that are in the map.
- First posted on arXiv 6 Jul 2025.

## Builds on (most cited first, 15 of 15)

- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Segment Anything](https://mlsanity.com/paper/2304.02643/) (2023)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Encoder-Decoder with Atrous Separable Convolution for Semantic Image Segmentation](https://mlsanity.com/paper/1802.02611/) (2018)
- [SegFormer: Simple and Efficient Design for Semantic Segmentation with Transformers](https://mlsanity.com/paper/2105.15203/) (2021)
- [SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation](https://mlsanity.com/paper/1511.00561/) (2015)
- [Tversky loss function for image segmentation using 3D fully convolutional deep networks](https://mlsanity.com/paper/1706.05721/) (2017)
- [Cross-Entropy Loss Functions: Theoretical Analysis and Applications](https://mlsanity.com/paper/2304.07288/) (2023)
- [2017 Robotic Instrument Segmentation Challenge](https://mlsanity.com/paper/1902.06426/) (2019)
- [2018 Robotic Scene Segmentation Challenge](https://mlsanity.com/paper/2001.11190/) (2020)
- [SurgicalSAM: Efficient Class Promptable Surgical Instrument Segmentation](https://mlsanity.com/paper/2308.08746/) (2023)
- [TernausNet: U-Net with VGG11 Encoder Pre-Trained on ImageNet for Image Segmentation](https://mlsanity.com/paper/1801.05746/) (2018)
- [ISINet: An Instance-Based Approach for Surgical Instrument Segmentation](https://mlsanity.com/paper/2007.05533/) (2020)
- [AdaptiveSAM: Towards Efficient Tuning of SAM for Surgical Scene Segmentation](https://mlsanity.com/paper/2308.03726/) (2023)
- [Deep Learning for Surgical Instrument Recognition and Segmentation in Robotic-Assisted Surgeries: A Systematic Review](https://mlsanity.com/paper/2410.07269/) (2024)

## Abstract (arXiv)

Holistic surgical scene segmentation in robot-assisted surgery (RAS) enables surgical residents to identify various anatomical tissues, articulated tools, and critical structures, such as veins and vessels. Given the firm intraoperative time constraints, it is challenging for surgeons to provide detailed real-time explanations of the operative field for trainees. This challenge is compounded by the scarcity of expert surgeons relative to trainees, making the unambiguous delineation of go- and no-go zones inconvenient. Therefore, high-performance semantic segmentation models offer a solution by providing clear postoperative analyses of surgical procedures. However, recent advanced segmentation models rely on user-generated prompts, rendering them impractical for lengthy surgical videos that commonly exceed an hour. To address this challenge, we introduce Surg-SegFormer, a novel prompt-free model that outperforms current state-of-the-art techniques. Surg-SegFormer attained a mean Intersection over Union (mIoU) of 0.80 on the EndoVis2018 dataset and 0.54 on the EndoVis2017 dataset. By providing robust and automated surgical scene comprehension, this model significantly reduces the tutoring burden on expert surgeons, empowering residents to independently and effectively understand complex surgical environments.