# Personalized MR-Informed Diffusion Models for 3D PET Image Reconstruction

arXiv: https://arxiv.org/abs/2506.03804 · HTML: https://mlsanity.com/paper/2506.03804/

## Key facts

- Cited by 2 papers in the map (data through 14 Oct 2026).
- Placed in Medical imaging and segmentation, one of 14 directions in Diffusion models.
- Builds on 14 of its 45 references that are in the map.
- First posted on arXiv 4 Jun 2025.

## Placed in

- Diffusion models / [Medical imaging and segmentation](https://mlsanity.com/diffusion/medical-imaging-and-segmentation/)

## Builds on (most cited first, 14 of 14)

- [Denoising Diffusion Probabilistic Models](https://mlsanity.com/paper/2006.11239/) (2020)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Diffusion Models Beat GANs on Image Synthesis](https://mlsanity.com/paper/2105.05233/) (2021)
- [Deep Unsupervised Learning using Nonequilibrium Thermodynamics](https://mlsanity.com/paper/1503.03585/) (2015)
- [Classifier-Free Diffusion Guidance](https://mlsanity.com/paper/2207.12598/) (2022)
- [Improved Techniques for Training Score-Based Generative Models](https://mlsanity.com/paper/2006.09011/) (2020)
- [VoxelMorph: A Learning Framework for Deformable Medical Image Registration](https://mlsanity.com/paper/1809.05231/) (2018)
- [Score-based diffusion models for accelerated MRI](https://mlsanity.com/paper/2110.05243/) (2021)
- [Solving 3D Inverse Problems using Pre-trained 2D Diffusion Models](https://mlsanity.com/paper/2211.10655/) (2022)
- [Decomposed Diffusion Sampler for Accelerating Large-Scale Inverse Problems](https://mlsanity.com/paper/2303.05754/) (2023)
- [Score-Based Generative Models for PET Image Reconstruction](https://mlsanity.com/paper/2308.14190/) (2023)
- [Likelihood-Scheduled Score-Based Generative Modeling for Fully 3D PET Image Reconstruction](https://mlsanity.com/paper/2412.04339/) (2024)
- [Patch-Based Diffusion Models Beat Whole-Image Models for Mismatched Distribution Inverse Problems](https://mlsanity.com/paper/2410.11730/) (2024)
- [Multi-Subject Image Synthesis as a Generative Prior for Single-Subject PET Image Reconstruction](https://mlsanity.com/paper/2412.04324/) (2024)

## Built on by (most cited first, 2 of 2)

- [PET Image Reconstruction Using Deep Diffusion Image Prior](https://mlsanity.com/paper/2507.15078/) (2025)
- [Patlak Parametric Image Estimation from Dynamic PET Using Diffusion Model Prior](https://mlsanity.com/paper/2512.19584/) (2025)

## Abstract (arXiv)

Recent work has shown improved lesion detectability and flexibility to reconstruction hyperparameters (e.g. scanner geometry or dose level) when PET images are reconstructed by leveraging pre-trained diffusion models. Such methods train a diffusion model (without sinogram data) on high-quality, but still noisy, PET images. In this work, we propose a simple method for generating subject-specific PET images from a dataset of multi-subject PET-MR scans, synthesizing "pseudo-PET" images by transforming between different patients' anatomy using image registration. The images we synthesize retain information from the subject's MR scan, leading to higher resolution and the retention of anatomical features compared to the original set of PET images. With simulated and real [18F]FDG datasets, we show that pre-training a personalized diffusion model with subject-specific "pseudo-PET" images improves reconstruction accuracy with low-count data. In particular, the method shows promise in combining information from a guidance MR scan without overly imposing anatomical features, demonstrating an improved trade-off between reconstructing PET-unique image features versus features present in both PET and MR. We believe this approach for generating and utilizing synthetic data has further applications to medical imaging tasks, particularly because patient-specific PET images can be generated without resorting to generative deep learning or large training datasets.