# Open-PMC-18M: A High-Fidelity Large Scale Medical Dataset for Multimodal Representation Learning

arXiv: https://arxiv.org/abs/2506.02738 · HTML: https://mlsanity.com/paper/2506.02738/

## Key facts

- Cited by 9 papers in the map (data through 14 Oct 2026).
- Placed in Medical vision-language models, one of 16 directions in Multimodal LLMs / vision-language models.
- Builds on 31 of its 46 references that are in the map.
- First posted on arXiv 3 Jun 2025.

## Placed in

- Multimodal LLMs / vision-language models / [Medical vision-language models](https://mlsanity.com/mllm/medical-vision-language-models/)

## Builds on (most cited first, 30 of 31)

- [Learning Transferable Visual Models From Natural Language Supervision](https://mlsanity.com/paper/2103.00020/) (2021)
- [An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale](https://mlsanity.com/paper/2010.11929/) (2020)
- [Representation Learning with Contrastive Predictive Coding](https://mlsanity.com/paper/1807.03748/) (2018)
- [End-to-End Object Detection with Transformers](https://mlsanity.com/paper/2005.12872/) (2020)
- [Emerging Properties in Self-Supervised Vision Transformers](https://mlsanity.com/paper/2104.14294/) (2021)
- [Qwen2.5-VL Technical Report](https://mlsanity.com/paper/2502.13923/) (2025)
- [LAION-5B: An open large-scale dataset for training next generation image-text models](https://mlsanity.com/paper/2210.08402/) (2022)
- [Scaling Up Visual and Vision-Language Representation Learning With Noisy Text Supervision](https://mlsanity.com/paper/2102.05918/) (2021)
- [LAION-400M: Open Dataset of CLIP-Filtered 400 Million Image-Text Pairs](https://mlsanity.com/paper/2111.02114/) (2021)
- [LLaVA-Med: Training a Large Language-and-Vision Assistant for Biomedicine in One Day](https://mlsanity.com/paper/2306.00890/) (2023)
- [ImageBind: One Embedding Space To Bind Them All](https://mlsanity.com/paper/2305.05665/) (2023)
- [Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing](https://mlsanity.com/paper/2007.15779/) (2020)
- [MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification](https://mlsanity.com/paper/2110.14795/) (2021)
- [DataComp: In search of the next generation of multimodal datasets](https://mlsanity.com/paper/2304.14108/) (2023)
- [FILIP: Fine-grained Interactive Language-Image Pre-Training](https://mlsanity.com/paper/2111.07783/) (2021)
- [DAB-DETR: Dynamic Anchor Boxes are Better Queries for DETR](https://mlsanity.com/paper/2201.12329/) (2022)
- [BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs](https://mlsanity.com/paper/2303.00915/) (2023)
- [SLIP: Self-supervision meets Language-Image Pre-training](https://mlsanity.com/paper/2112.12750/) (2021)
- [PlotQA: Reasoning over Scientific Plots](https://mlsanity.com/paper/1909.00997/) (2019)
- [PMC-CLIP: Contrastive Language-Image Pre-training using Biomedical Documents](https://mlsanity.com/paper/2303.07240/) (2023)
- [MedMNIST Classification Decathlon: A Lightweight AutoML Benchmark for Medical Image Analysis](https://mlsanity.com/paper/2010.14925/) (2020)
- [Quilt-1M: One Million Image-Text Pairs for Histopathology](https://mlsanity.com/paper/2306.11207/) (2023)
- [PAD-UFES-20: a skin lesion dataset composed of patient data and clinical images collected from smartphones](https://mlsanity.com/paper/2007.00478/) (2020)
- [Medical Visual Question Answering: A Survey](https://mlsanity.com/paper/2111.10056/) (2021)
- [MedICaT: A Dataset of Medical Images, Captions, and Textual References](https://mlsanity.com/paper/2010.06000/) (2020)
- [DeepOpht: Medical Report Generation for Retinal Images via Deep Models and Visual Explanation](https://mlsanity.com/paper/2011.00569/) (2020)
- [BIOMEDICA: An Open Biomedical Image-Caption Archive, Dataset, and Vision-Language Models Derived from Scientific Literature](https://mlsanity.com/paper/2501.07171/) (2025)
- [DiffRect: Latent Diffusion Label Rectification for Semi-supervised Medical Image Segmentation](https://mlsanity.com/paper/2407.09918/) (2024)
- [A Data Driven Approach for Compound Figure Separation Using Convolutional Neural Networks](https://mlsanity.com/paper/1703.05105/) (2017)
- [Compound Figure Separation of Biomedical Images with Side Loss](https://mlsanity.com/paper/2107.08650/) (2021)

## Built on by (most cited first, 9 of 9)

- [A Survey of Scientific Large Language Models: From Data Foundations to Agent Frontiers](https://mlsanity.com/paper/2508.21148/) (2025)
- [MicroVQA++: High-Quality Microscopy Reasoning Dataset with Weakly Supervised Graphs for Multimodal Large Language Model](https://mlsanity.com/paper/2511.11407/) (2025)
- [Forging a Dynamic Memory: Retrieval-Guided Continual Learning for Generalist Medical Foundation Models](https://mlsanity.com/paper/2512.13072/) (2025)
- [Beyond Captions: Context-Grounded Reconstruction for Biomedical Multimodal Continued Pretraining](https://mlsanity.com/paper/2606.01049/) (2026)
- [OpenMedReason: Scientific Reasoning Supervision for Medical Vision-Language Models](https://mlsanity.com/paper/2606.12169/) (2026)
- [MedPMC: A Systematic Framework for Scaling High-Fidelity Medical Multimodal Data for Foundation Models](https://mlsanity.com/paper/2607.07673/) (2026)
- [From Panel to Pixel: Zoom-In Vision-Language Pretraining from Biomedical Scientific Literature](https://mlsanity.com/paper/2512.02566/) (2025)
- [PhenoLIP: Integrating Phenotype Ontology Knowledge into Medical Vision-Language Pretraining](https://mlsanity.com/paper/2602.06184/) (2026)
- [MatMMExtract: An Open-Source Pipeline for Panel-Level Extraction of Grounded Image-Text Pairs from Materials Science Literature](https://mlsanity.com/paper/2606.29667/) (2026)

## Abstract (arXiv)

In biomedical vision-language modeling, datasets are typically mined from scientific literature, pairing compound figures with captions that are short, context-dependent, and oftern partially informative. Prior work on subfigure extraction has been limited in both dataset size and generalizability. In addition, no existing effort has incorporated rich medical context in image-text pairs. We revisit data curation as a foundational component of effective biomedical representation learning. Our data curation process integrates transformer-based subfigure detection, subcaption extraction, and contextual text enrichment derived from inline references. Our subfigure extraction model, trained on a corpus of 500,000 compound figures, achieves state-of-the-art performance on real and synthetic benchmarks. Using this process, we curate and release Open-PMC-18M, a large-scale high-fidelity biomedical dataset comprising 18 million image-text pairs, spanning radiology, microscopy, and visible light photography. We train vision-language models on our dataset and perform extensive evaluation on 6 retrieval and 19 zero-shot classification tasks across three major modalities. The models trained on our dataset set a new state-of-the-art results in medical representation learning. We release our dataset, models, and code to support reproducible benchmarks and further study into biomedical vision-language modeling and representation learning.