# VLM-based Prompts as the Optimal Assistant for Unpaired Histopathology Virtual Staining

arXiv: https://arxiv.org/abs/2504.15545 · HTML: https://mlsanity.com/paper/2504.15545/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 32 of its 73 references that are in the map.
- First posted on arXiv 22 Apr 2025.

## Builds on (most cited first, 30 of 32)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [A Simple Framework for Contrastive Learning of Visual Representations](https://mlsanity.com/paper/2002.05709/) (2020)
- [Score-Based Generative Modeling through Stochastic Differential Equations](https://mlsanity.com/paper/2011.13456/) (2020)
- [Momentum Contrast for Unsupervised Visual Representation Learning](https://mlsanity.com/paper/1911.05722/) (2019)
- [Mask R-CNN](https://mlsanity.com/paper/1703.06870/) (2017)
- [Learning to Prompt for Vision-Language Models](https://mlsanity.com/paper/2109.01134/) (2021)
- [Conditional Prompt Learning for Vision-Language Models](https://mlsanity.com/paper/2203.05557/) (2022)
- [Null-text Inversion for Editing Real Images using Guided Diffusion Models](https://mlsanity.com/paper/2211.09794/) (2022)
- [Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images](https://mlsanity.com/paper/2004.09666/) (2020)
- [Quilt-1M: One Million Image-Text Pairs for Histopathology](https://mlsanity.com/paper/2306.11207/) (2023)
- [U-GAT-IT: Unsupervised Generative Attentional Networks with Adaptive Layer-Instance Normalization for Image-to-Image Translation](https://mlsanity.com/paper/1907.10830/) (2019)
- [EGSDE: Unpaired Image-to-Image Translation via Energy-Guided Stochastic Differential Equations](https://mlsanity.com/paper/2207.06635/) (2022)
- [Iterative Prompt Learning for Unsupervised Backlit Image Enhancement](https://mlsanity.com/paper/2303.17569/) (2023)
- [Unpaired Image-to-Image Translation via Neural Schr"odinger Bridge](https://mlsanity.com/paper/2305.15086/) (2023)
- [BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix](https://mlsanity.com/paper/2204.11425/) (2022)
- [PathAsst: A Generative Foundation AI Assistant Towards Artificial General Intelligence of Pathology](https://mlsanity.com/paper/2305.15072/) (2023)
- [Deep learning-based transformation of the H&E stain into special stains](https://mlsanity.com/paper/2008.08871/) (2020)
- [The Rise of AI Language Pathologists: Exploring Two-level Prompt Learning for Few-shot Weakly-supervised Whole Slide Image Classification](https://mlsanity.com/paper/2305.17891/) (2023)
- [ArtBank: Artistic Style Transfer with Pre-trained Diffusion Model and Implicit Style Prompt Bank](https://mlsanity.com/paper/2312.06135/) (2023)
- [CPath-Omni: A Unified Multimodal Foundation Model for Patch and Whole Slide Image Analysis in Computational Pathology](https://mlsanity.com/paper/2412.12077/) (2024)
- [Digital synthesis of histological stains using micro-structured and multiplexed virtual staining of label-free tissue](https://mlsanity.com/paper/2001.07267/) (2020)
- [Generalizable Whole Slide Image Classification with Fine-Grained Visual-Semantic Interaction](https://mlsanity.com/paper/2402.19326/) (2024)
- [Pathological Semantics-Preserving Learning for H&E-to-IHC Virtual Staining](https://mlsanity.com/paper/2407.03655/) (2024)
- [MSCPT: Few-shot Whole Slide Image Classification with Multi-scale and Context-focused Prompt Tuning](https://mlsanity.com/paper/2408.11505/) (2024)
- [Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology](https://mlsanity.com/paper/2409.09369/) (2024)
- [Unpaired Photo-realistic Image Deraining with Energy-informed Diffusion Model](https://mlsanity.com/paper/2407.17193/) (2024)
- [FAST: A Dual-tier Few-Shot Learning Paradigm for Whole Slide Image Classification](https://mlsanity.com/paper/2409.19720/) (2024)
- [Strategies for Training Stain Invariant CNNs](https://mlsanity.com/paper/1810.10338/) (2018)
- [Every Pixel Has its Moments: Ultra-High-Resolution Unpaired Image-to-Image Translation via Dense Normalization](https://mlsanity.com/paper/2407.04245/) (2024)
- [Unpaired Multi-Domain Histopathology Virtual Staining using Dual Path Prompted Inversion](https://mlsanity.com/paper/2412.11106/) (2024)

## Abstract (arXiv)

In histopathology, tissue sections are typically stained using common H&E staining or special stains (MAS, PAS, PASM, etc.) to clearly visualize specific tissue structures. The rapid advancement of deep learning offers an effective solution for generating virtually stained images, significantly reducing the time and labor costs associated with traditional histochemical staining. However, a new challenge arises in separating the fundamental visual characteristics of tissue sections from the visual differences induced by staining agents. Additionally, virtual staining often overlooks essential pathological knowledge and the physical properties of staining, resulting in only style-level transfer. To address these issues, we introduce, for the first time in virtual staining tasks, a pathological vision-language large model (VLM) as an auxiliary tool. We integrate contrastive learnable prompts, foundational concept anchors for tissue sections, and staining-specific concept anchors to leverage the extensive knowledge of the pathological VLM. This approach is designed to describe, frame, and enhance the direction of virtual staining. Furthermore, we have developed a data augmentation method based on the constraints of the VLM. This method utilizes the VLM's powerful image interpretation capabilities to further integrate image style and structural information, proving beneficial in high-precision pathological diagnostics. Extensive evaluations on publicly available multi-domain unpaired staining datasets demonstrate that our method can generate highly realistic images and enhance the accuracy of downstream tasks, such as glomerular detection and segmentation. Our code is available at: https://github.com/CZZZZZZZZZZZZZZZZZ/VPGAN-HARBOR