# Mineral segmentation using electron microscope images and spectral sampling through multimodal graph neural networks

arXiv: https://arxiv.org/abs/2503.03507 · HTML: https://mlsanity.com/paper/2503.03507/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 11 of its 35 references that are in the map.
- First posted on arXiv 5 Mar 2025.

## Builds on (most cited first, 11 of 11)

- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Semi-Supervised Classification with Graph Convolutional Networks](https://mlsanity.com/paper/1609.02907/) (2016)
- [Graph Attention Networks](https://mlsanity.com/paper/1710.10903/) (2017)
- [How Powerful are Graph Neural Networks?](https://mlsanity.com/paper/1810.00826/) (2018)
- [Fast Graph Representation Learning with PyTorch Geometric](https://mlsanity.com/paper/1903.02428/) (2019)
- [Learning to Simulate Complex Physics with Graph Networks](https://mlsanity.com/paper/2002.09405/) (2020)
- [Deep Multi-modal Object Detection and Semantic Segmentation for Autonomous Driving: Datasets, Methods, and Challenges](https://mlsanity.com/paper/1902.07830/) (2019)
- [Learning Rich Features from RGB-D Images for Object Detection and Segmentation](https://mlsanity.com/paper/1407.5736/) (2014)
- [Sparse and Dense Data with CNNs: Depth Completion and Semantic Segmentation](https://mlsanity.com/paper/1808.00769/) (2018)
- [Indoor Semantic Segmentation using depth information](https://mlsanity.com/paper/1301.3572/) (2013)
- [A Survey on Graph Neural Networks and Graph Transformers in Computer Vision: A Task-Oriented Perspective](https://mlsanity.com/paper/2209.13232/) (2022)

## Abstract (arXiv)

We propose a novel Graph Neural Network-based method for segmentation based on data fusion of multimodal Scanning Electron Microscope (SEM) images. In most cases, Backscattered Electron (BSE) images obtained using SEM do not contain sufficient information for mineral segmentation. Therefore, imaging is often complemented with point-wise Energy-Dispersive X-ray Spectroscopy (EDS) spectral measurements that provide highly accurate information about the chemical composition but that are time-consuming to acquire. This motivates the use of sparse spectral data in conjunction with BSE images for mineral segmentation. The unstructured nature of the spectral data makes most traditional image fusion techniques unsuitable for BSE-EDS fusion. We propose using graph neural networks to fuse the two modalities and segment the mineral phases simultaneously. Our results demonstrate that providing EDS data for as few as 1% of BSE pixels produces accurate segmentation, enabling rapid analysis of mineral samples. The proposed data fusion pipeline is versatile and can be adapted to other domains that involve image data and point-wise measurements.