# GFM-RAG: Graph Foundation Model for Retrieval Augmented Generation

arXiv: https://arxiv.org/abs/2502.01113 · HTML: https://mlsanity.com/paper/2502.01113/

## Key facts

- Cited by 40 papers in the map (data through 14 Oct 2026).
- Placed in Knowledge-graph and structured-knowledge RAG, one of 15 directions in Retrieval-augmented generation.
- Builds on 62 of its 74 references that are in the map.
- First posted on arXiv 3 Feb 2025.

## Placed in

- Retrieval-augmented generation / [Knowledge-graph and structured-knowledge RAG](https://mlsanity.com/rag/knowledge-graph-and-structured-knowledge-rag/)

## Builds on (most cited first, 30 of 62)

- [Scaling Laws for Neural Language Models](https://mlsanity.com/paper/2001.08361/) (2020)
- [Dense Passage Retrieval for Open-Domain Question Answering](https://mlsanity.com/paper/2004.04906/) (2020)
- [HotpotQA: A Dataset for Diverse, Explainable Multi-hop Question Answering](https://mlsanity.com/paper/1809.09600/) (2018)
- [Neural Message Passing for Quantum Chemistry](https://mlsanity.com/paper/1704.01212/) (2017)
- [A Comprehensive Survey on Graph Neural Networks](https://mlsanity.com/paper/1901.00596/) (2019)
- [Retrieval-Augmented Generation for Large Language Models: A Survey](https://mlsanity.com/paper/2312.10997/) (2023)
- [MS MARCO: A Human Generated MAchine Reading COmprehension Dataset](https://mlsanity.com/paper/1611.09268/) (2016)
- [From Local to Global: A Graph RAG Approach to Query-Focused Summarization](https://mlsanity.com/paper/2404.16130/) (2024)
- [PubMedQA: A Dataset for Biomedical Research Question Answering](https://mlsanity.com/paper/1909.06146/) (2019)
- [Constructing A Multi-hop QA Dataset for Comprehensive Evaluation of Reasoning Steps](https://mlsanity.com/paper/2011.01060/) (2020)
- [Unsupervised Dense Information Retrieval with Contrastive Learning](https://mlsanity.com/paper/2112.09118/) (2021)
- [Embedding Entities and Relations for Learning and Inference in Knowledge Bases](https://mlsanity.com/paper/1412.6575/) (2014)
- [Interleaving Retrieval with Chain-of-Thought Reasoning for Knowledge-Intensive Multi-Step Questions](https://mlsanity.com/paper/2212.10509/) (2022)
- [MuSiQue: Multihop Questions via Single-hop Question Composition](https://mlsanity.com/paper/2108.00573/) (2021)
- [Towards General Text Embeddings with Multi-stage Contrastive Learning](https://mlsanity.com/paper/2308.03281/) (2023)
- [Scaling Vision Transformers to 22 Billion Parameters](https://mlsanity.com/paper/2302.05442/) (2023)
- [Deep Learning Scaling is Predictable, Empirically](https://mlsanity.com/paper/1712.00409/) (2017)
- [RAPTOR: Recursive Abstractive Processing for Tree-Organized Retrieval](https://mlsanity.com/paper/2401.18059/) (2024)
- [Active Retrieval Augmented Generation](https://mlsanity.com/paper/2305.06983/) (2023)
- [ColBERTv2: Effective and Efficient Retrieval via Lightweight Late Interaction](https://mlsanity.com/paper/2112.01488/) (2021)
- [NV-Embed: Improved Techniques for Training LLMs as Generalist Embedding Models](https://mlsanity.com/paper/2405.17428/) (2024)
- [Large Dual Encoders Are Generalizable Retrievers](https://mlsanity.com/paper/2112.07899/) (2021)
- [Adaptive-RAG: Learning to Adapt Retrieval-Augmented Large Language Models through Question Complexity](https://mlsanity.com/paper/2403.14403/) (2024)
- [QA-GNN: Reasoning with Language Models and Knowledge Graphs for Question Answering](https://mlsanity.com/paper/2104.06378/) (2021)
- [Reasoning on Graphs: Faithful and Interpretable Large Language Model Reasoning](https://mlsanity.com/paper/2310.01061/) (2023)
- [Graph Retrieval-Augmented Generation: A Survey](https://mlsanity.com/paper/2408.08921/) (2024)
- [HippoRAG: Neurobiologically Inspired Long-Term Memory for Large Language Models](https://mlsanity.com/paper/2405.14831/) (2024)
- [GraphGPT: Graph Instruction Tuning for Large Language Models](https://mlsanity.com/paper/2310.13023/) (2023)
- [G-Retriever: Retrieval-Augmented Generation for Textual Graph Understanding and Question Answering](https://mlsanity.com/paper/2402.07630/) (2024)
- [Retrieval-Augmented Generation with Graphs (GraphRAG)](https://mlsanity.com/paper/2501.00309/) (2024)

## Built on by (most cited first, 30 of 40)

- [Graph-R1: Towards Agentic GraphRAG Framework via End-to-end Reinforcement Learning](https://mlsanity.com/paper/2507.21892/) (2025)
- [LinearRAG: Linear Graph Retrieval Augmented Generation on Large-scale Corpora](https://mlsanity.com/paper/2510.10114/) (2025)
- [GraphRAG-Bench: Challenging Domain-Specific Reasoning for Evaluating Graph Retrieval-Augmented Generation](https://mlsanity.com/paper/2506.02404/) (2025)
- [Graphs Meet AI Agents: Taxonomy, Progress, and Future Opportunities](https://mlsanity.com/paper/2506.18019/) (2025)
- [Youtu-GraphRAG: Vertically Unified Agents for Graph Retrieval-Augmented Complex Reasoning](https://mlsanity.com/paper/2508.19855/) (2025)
- [Towards Effective Federated Graph Foundation Model via Mitigating Knowledge Entanglement](https://mlsanity.com/paper/2505.12684/) (2025)
- [Can Knowledge-Graph-based Retrieval Augmented Generation Really Retrieve What You Need?](https://mlsanity.com/paper/2510.16582/) (2025)
- [RAG-GFM: Overcoming In-Memory Bottlenecks in Graph Foundation Models via Retrieval-Augmented Generation](https://mlsanity.com/paper/2601.15124/) (2026)
- [Weak-to-Strong GraphRAG: Aligning Weak Retrievers with Large Language Models for Graph-based Retrieval Augmented Generation](https://mlsanity.com/paper/2506.22518/) (2025)
- [ProgRAG: Hallucination-Resistant Progressive Retrieval and Reasoning over Knowledge Graphs](https://mlsanity.com/paper/2511.10240/) (2025)
- [Agents-K1: Towards Agent-native Knowledge Orchestration](https://mlsanity.com/paper/2606.13669/) (2026)
- [ClinicalBench: Stress-Testing Assertion-Aware Retrieval for Cross-Admission Clinical QA on MIMIC-IV](https://mlsanity.com/paper/2605.11143/) (2026)
- [SAGE: A Self-Evolving Agentic Graph-Memory Engine for Structure-Aware Associative Memory](https://mlsanity.com/paper/2605.12061/) (2026)
- [HyperRAG: Reasoning N-ary Facts over Hypergraphs for Retrieval Augmented Generation](https://mlsanity.com/paper/2602.14470/) (2026)
- [Toward Robust GraphRAG: Mitigating Retrieval Drift and Hallucination from Imperfect Knowledge Graphs](https://mlsanity.com/paper/2603.14828/) (2026)
- [MG2-RAG: Multi-Granularity Graph for Multimodal Retrieval-Augmented Generation](https://mlsanity.com/paper/2604.04969/) (2026)
- [DOTRAG: Retrieval-Time Reasoning Along Paths](https://mlsanity.com/paper/2605.18760/) (2026)
- [DeepDiscovery: A Location-Inference Framework for Task-Level Repository Understanding](https://mlsanity.com/paper/2606.22906/) (2026)
- [HyperSU: Corpus-Driven Semantic-Unit Hypergraph for Retrieval-Augmented Generation](https://mlsanity.com/paper/2606.28351/) (2026)
- [LlamaRec-LKG-RAG: A Single-Pass, Learnable Knowledge Graph-RAG Framework for LLM-Based Ranking](https://mlsanity.com/paper/2506.07449/) (2025)
- [T-CPDL: A Temporal Causal Probabilistic Description Logic for Developing Logic-RAG Agent](https://mlsanity.com/paper/2506.18559/) (2025)
- [GOSU: Retrieval-Augmented Generation with Global-Level Optimized Semantic Unit-Centric Framework](https://mlsanity.com/paper/2509.00449/) (2025)
- [Two Facets of the Same Optimization Coin: Model Degradation and Representation Collapse in Graph Foundation Models](https://mlsanity.com/paper/2509.08401/) (2025)
- [Beyond Static Retrieval: Opportunities and Pitfalls of Iterative Retrieval in GraphRAG](https://mlsanity.com/paper/2509.25530/) (2025)
- [KGFR: A Foundation Retriever for Generalized Knowledge Graph Question Answering](https://mlsanity.com/paper/2511.04093/) (2025)
- [Deep GraphRAG: A Balanced Approach to Hierarchical Retrieval and Adaptive Integration](https://mlsanity.com/paper/2601.11144/) (2026)
- [Graphs Don't Stay Secret: Practical Subgraph Reconstruction Attacks on Defended Graph RAG](https://mlsanity.com/paper/2602.06495/) (2026)
- [UltRAG: a Universal Simple Scalable Recipe for Knowledge Graph RAG](https://mlsanity.com/paper/2603.28773/) (2026)
- [AtomicRAG: Atom-Entity Graphs for Retrieval-Augmented Generation](https://mlsanity.com/paper/2604.20844/) (2026)
- [SeedER: Seed-Expand-Retrieve for Efficient Knowledge Graph Retrieval](https://mlsanity.com/paper/2605.23753/) (2026)

## Abstract (arXiv)

Retrieval-augmented generation (RAG) has proven effective in integrating knowledge into large language models (LLMs). However, conventional RAGs struggle to capture complex relationships between pieces of knowledge, limiting their performance in intricate reasoning that requires integrating knowledge from multiple sources. Recently, graph-enhanced retrieval augmented generation (GraphRAG) builds graph structure to explicitly model these relationships, enabling more effective and efficient retrievers. Nevertheless, its performance is still hindered by the noise and incompleteness within the graph structure. To address this, we introduce GFM-RAG, a novel graph foundation model (GFM) for retrieval augmented generation. GFM-RAG is powered by an innovative graph neural network that reasons over graph structure to capture complex query-knowledge relationships. The GFM with 8M parameters undergoes a two-stage training process on large-scale datasets, comprising 60 knowledge graphs with over 14M triples and 700k documents. This results in impressive performance and generalizability for GFM-RAG, making it the first graph foundation model applicable to unseen datasets for retrieval without any fine-tuning required. Extensive experiments on three multi-hop QA datasets and seven domain-specific RAG datasets demonstrate that GFM-RAG achieves state-of-the-art performance while maintaining efficiency and alignment with neural scaling laws, highlighting its potential for further improvement.