# M3SciQA: A Multi-Modal Multi-Document Scientific QA Benchmark for Evaluating Foundation Models

arXiv: https://arxiv.org/abs/2411.04075 · HTML: https://mlsanity.com/paper/2411.04075/

## Key facts

- Cited by 27 papers in the map (data through 14 Oct 2026).
- Builds on 31 of its 46 references that are in the map.
- First posted on arXiv 6 Nov 2024.

## Builds on (most cited first, 30 of 31)

- [Learning Transferable Visual Models From Natural Language Supervision](https://mlsanity.com/paper/2103.00020/) (2021)
- [Microsoft COCO: Common Objects in Context](https://mlsanity.com/paper/1405.0312/) (2014)
- [BERTScore: Evaluating Text Generation with BERT](https://mlsanity.com/paper/1904.09675/) (2019)
- [SQuAD: 100,000+ Questions for Machine Comprehension of Text](https://mlsanity.com/paper/1606.05250/) (2016)
- [HotpotQA: A Dataset for Diverse, Explainable Multi-hop Question Answering](https://mlsanity.com/paper/1809.09600/) (2018)
- [InternVL: Scaling up Vision Foundation Models and Aligning for Generic Visual-Linguistic Tasks](https://mlsanity.com/paper/2312.14238/) (2023)
- [Qwen-VL: A Versatile Vision-Language Model for Understanding, Localization, Text Reading, and Beyond](https://mlsanity.com/paper/2308.12966/) (2023)
- [MMBench: Is Your Multi-modal Model an All-around Player?](https://mlsanity.com/paper/2307.06281/) (2023)
- [MMMU: A Massive Multi-discipline Multimodal Understanding and Reasoning Benchmark for Expert AGI](https://mlsanity.com/paper/2311.16502/) (2023)
- [Learn to Explain: Multimodal Reasoning via Thought Chains for Science Question Answering](https://mlsanity.com/paper/2209.09513/) (2022)
- [MathVista: Evaluating Mathematical Reasoning of Foundation Models in Visual Contexts](https://mlsanity.com/paper/2310.02255/) (2023)
- [MS MARCO: A Human Generated MAchine Reading COmprehension Dataset](https://mlsanity.com/paper/1611.09268/) (2016)
- [ChartQA: A Benchmark for Question Answering about Charts with Visual and Logical Reasoning](https://mlsanity.com/paper/2203.10244/) (2022)
- [MM-Vet: Evaluating Large Multimodal Models for Integrated Capabilities](https://mlsanity.com/paper/2308.02490/) (2023)
- [Unsupervised Dense Information Retrieval with Contrastive Learning](https://mlsanity.com/paper/2112.09118/) (2021)
- [SEED-Bench: Benchmarking Multimodal LLMs with Generative Comprehension](https://mlsanity.com/paper/2307.16125/) (2023)
- [DialoGPT: Large-Scale Generative Pre-training for Conversational Response Generation](https://mlsanity.com/paper/1911.00536/) (2019)
- [AlpacaFarm: A Simulation Framework for Methods that Learn from Human Feedback](https://mlsanity.com/paper/2305.14387/) (2023)
- [DeepSeek-VL: Towards Real-World Vision-Language Understanding](https://mlsanity.com/paper/2403.05525/) (2024)
- [A Dataset of Information-Seeking Questions and Answers Anchored in Research Papers](https://mlsanity.com/paper/2105.03011/) (2021)
- [News Summarization and Evaluation in the Era of GPT-3](https://mlsanity.com/paper/2209.12356/) (2022)
- [CharXiv: Charting Gaps in Realistic Chart Understanding in Multimodal LLMs](https://mlsanity.com/paper/2406.18521/) (2024)
- [GeoQA: A Geometric Question Answering Benchmark Towards Multimodal Numerical Reasoning](https://mlsanity.com/paper/2105.14517/) (2021)
- [MultiModalQA: Complex Question Answering over Text, Tables and Images](https://mlsanity.com/paper/2104.06039/) (2021)
- [RecipeQA: A Challenge Dataset for Multimodal Comprehension of Cooking Recipes](https://mlsanity.com/paper/1809.00812/) (2018)
- [Benchmarking Generation and Evaluation Capabilities of Large Language Models for Instruction Controllable Summarization](https://mlsanity.com/paper/2311.09184/) (2023)
- [DocMath-Eval: Evaluating Math Reasoning Capabilities of LLMs in Understanding Long and Specialized Documents](https://mlsanity.com/paper/2311.09805/) (2023)
- [Towards Interpretable and Efficient Automatic Reference-Based Summarization Evaluation](https://mlsanity.com/paper/2303.03608/) (2023)
- [Information Value: Measuring Utterance Predictability as Distance from Plausible Alternatives](https://mlsanity.com/paper/2310.13676/) (2023)
- [A Question Answering Framework for Decontextualizing User-facing Snippets from Scientific Documents](https://mlsanity.com/paper/2305.14772/) (2023)

## Built on by (most cited first, 27 of 27)

- [EmoBench-M: Benchmarking Emotional Intelligence for Multimodal Large Language Models](https://mlsanity.com/paper/2502.04424/) (2025)
- [Large Language Models Meet Knowledge Graphs for Question Answering: Synthesis and Opportunities](https://mlsanity.com/paper/2505.20099/) (2025)
- [SciArena: An Open Evaluation Platform for Non-Verifiable Scientific Literature-Grounded Tasks](https://mlsanity.com/paper/2507.01001/) (2025)
- [SciVer: Evaluating Foundation Models for Multimodal Scientific Claim Verification](https://mlsanity.com/paper/2506.15569/) (2025)
- [AbGen: Evaluating Large Language Models in Ablation Study Design and Evaluation for Scientific Research](https://mlsanity.com/paper/2507.13300/) (2025)
- [Can Multimodal Foundation Models Understand Schematic Diagrams? An Empirical Study on Information-Seeking QA over Scientific Papers](https://mlsanity.com/paper/2507.10787/) (2025)
- [Evolving Roles of LLMs in Scientific Innovation: Assistant, Collaborator, Scientist, and Evaluator](https://mlsanity.com/paper/2507.11810/) (2025)
- [SemBench: A Benchmark for Semantic Query Processing Engines](https://mlsanity.com/paper/2511.01716/) (2025)
- [DocHop-QA: Towards Multi-Hop Reasoning over Multimodal Document Collections](https://mlsanity.com/paper/2508.15851/) (2025)
- [LitTraceQA: A Benchmark for Multi-Stage Grounding and Verification in Scientific Question Answering](https://mlsanity.com/paper/2608.07370/) (2026)
- [NeuSym-RAG: Hybrid Neural Symbolic Retrieval with Multiview Structuring for PDF Question Answering](https://mlsanity.com/paper/2505.19754/) (2025)
- [HiSciBench: A Hierarchical Multi-disciplinary Benchmark for Scientific Intelligence from Reading to Discovery](https://mlsanity.com/paper/2512.22899/) (2025)
- [GRAFT: GRaPH and Table Reasoning for Textual Alignment -- A Benchmark for Structured Instruction Following and Visual Reasoning](https://mlsanity.com/paper/2508.15690/) (2025)
- [PaperTrail: A Claim-Evidence Interface for Grounding Provenance in LLM-based Scholarly Q&A](https://mlsanity.com/paper/2602.21045/) (2026)
- [SciMDR: Advancing Scientific Multimodal Document Reasoning](https://mlsanity.com/paper/2603.12249/) (2026)
- [AirQA: A Comprehensive QA Dataset for AI Research with Instance-Level Evaluation](https://mlsanity.com/paper/2509.16952/) (2025)
- [An Expert Schema for Evaluating Large Language Model Errors in Scholarly Question-Answering Systems](https://mlsanity.com/paper/2602.21059/) (2026)
- [Automatic Inter-document Multi-hop Scientific QA Generation](https://mlsanity.com/paper/2603.14257/) (2026)
- [PaperScope: A Multi-Modal Multi-Document Benchmark for Agentic Deep Research Across Massive Scientific Papers](https://mlsanity.com/paper/2604.11307/) (2026)
- [Querying Multimodal Scientific Papers with AI: Practices and Preferences Across Blind, Low-Vision, and Sighted Scientists](https://mlsanity.com/paper/2607.18514/) (2026)
- [SciDocBench: A Workflow-Centered Benchmark and Data Pipeline for Scientific Document Understanding](https://mlsanity.com/paper/2609.05141/) (2026)
- [Amnesia by Design, Memory By Necessity: Persistent State for Document Intelligence](https://mlsanity.com/paper/2609.32041/) (2026)
- [Diagnosing Structural Failures in LLM-Based Evidence Extraction for Meta-Analysis](https://mlsanity.com/paper/2602.10881/) (2026)
- [MULTISEISMO: A Multimodal Seismic Dataset and Model for Cross-Modal Seismic Understanding](https://mlsanity.com/paper/2605.26320/) (2026)
- [SciR: A Controllable Benchmark for Scientific Reasoning in LLMs](https://mlsanity.com/paper/2606.13020/) (2026)
- [DocNavRAG: Document-Structured Graph RAG with Stateful Evidence Construction for Complex Document Question Answering](https://mlsanity.com/paper/2608.01565/) (2026)
- [From Stages to States: Unified Iterative Reasoning for MLLMs](https://mlsanity.com/paper/2610.15620/) (2026)

## Abstract (arXiv)

Existing benchmarks for evaluating foundation models mainly focus on single-document, text-only tasks. However, they often fail to fully capture the complexity of research workflows, which typically involve interpreting non-textual data and gathering information across multiple documents. To address this gap, we introduce M3SciQA, a multi-modal, multi-document scientific question answering benchmark designed for a more comprehensive evaluation of foundation models. M3SciQA consists of 1,452 expert-annotated questions spanning 70 natural language processing paper clusters, where each cluster represents a primary paper along with all its cited documents, mirroring the workflow of comprehending a single paper by requiring multi-modal and multi-document data. With M3SciQA, we conduct a comprehensive evaluation of 18 foundation models. Our results indicate that current foundation models still significantly underperform compared to human experts in multi-modal information retrieval and in reasoning across multiple scientific documents. Additionally, we explore the implications of these findings for the future advancement of applying foundation models in multi-modal scientific literature analysis.