# Large Language Model Benchmarks in Medical Tasks

arXiv: https://arxiv.org/abs/2410.21348 · HTML: https://mlsanity.com/paper/2410.21348/

## Key facts

- Cited by 17 papers in the map (data through 14 Oct 2026).
- Builds on 154 of its 366 references that are in the map.
- First posted on arXiv 28 Oct 2024.

## Builds on (most cited first, 30 of 154)

- [Measuring Massive Multitask Language Understanding](https://mlsanity.com/paper/2009.03300/) (2020)
- [BERTScore: Evaluating Text Generation with BERT](https://mlsanity.com/paper/1904.09675/) (2019)
- [SQuAD: 100,000+ Questions for Machine Comprehension of Text](https://mlsanity.com/paper/1606.05250/) (2016)
- [The Pile: An 800GB Dataset of Diverse Text for Language Modeling](https://mlsanity.com/paper/2101.00027/) (2020)
- [Large Language Models Encode Clinical Knowledge](https://mlsanity.com/paper/2212.13138/) (2022)
- [Microsoft COCO Captions: Data Collection and Evaluation Server](https://mlsanity.com/paper/1504.00325/) (2015)
- [CheXpert: A Large Chest Radiograph Dataset with Uncertainty Labels and Expert Comparison](https://mlsanity.com/paper/1901.07031/) (2019)
- [What Disease does this Patient Have? A Large-scale Open Domain Question Answering Dataset from Medical Exams](https://mlsanity.com/paper/2009.13081/) (2020)
- [PubMedQA: A Dataset for Biomedical Research Question Answering](https://mlsanity.com/paper/1909.06146/) (2019)
- [BEIR: A Heterogenous Benchmark for Zero-shot Evaluation of Information Retrieval Models](https://mlsanity.com/paper/2104.08663/) (2021)
- [Domain-Specific Language Model Pretraining for Biomedical Natural Language Processing](https://mlsanity.com/paper/2007.15779/) (2020)
- [ChestX-ray8: Hospital-scale Chest X-ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases](https://mlsanity.com/paper/1705.02315/) (2017)
- [C-Eval: A Multi-Level Multi-Discipline Chinese Evaluation Suite for Foundation Models](https://mlsanity.com/paper/2305.08322/) (2023)
- [MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification](https://mlsanity.com/paper/2110.14795/) (2021)
- [MedMCQA : A Large-scale Multi-Subject Multi-Choice Dataset for Medical domain Question Answering](https://mlsanity.com/paper/2203.14371/) (2022)
- [BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs](https://mlsanity.com/paper/2303.00915/) (2023)
- [The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification](https://mlsanity.com/paper/2107.02314/) (2021)
- [PathVQA: 30000+ Questions for Medical Visual Question Answering](https://mlsanity.com/paper/2003.10286/) (2020)
- [SLAKE: A Semantically-Labeled Knowledge-Enhanced Dataset for Medical Visual Question Answering](https://mlsanity.com/paper/2102.09542/) (2021)
- [Using cognitive psychology to understand GPT-3](https://mlsanity.com/paper/2206.14576/) (2022)
- [EndoNet: A Deep Architecture for Recognition Tasks on Laparoscopic Videos](https://mlsanity.com/paper/1602.03012/) (2016)
- [Causal Reasoning and Large Language Models: Opening a New Frontier for Causality](https://mlsanity.com/paper/2305.00050/) (2023)
- [PMC-VQA: Visual Instruction Tuning for Medical Visual Question Answering](https://mlsanity.com/paper/2305.10415/) (2023)
- [ChatDoctor: A Medical Chat Model Fine-Tuned on a Large Language Model Meta-AI (LLaMA) Using Medical Domain Knowledge](https://mlsanity.com/paper/2303.14070/) (2023)
- [PadChest: A large chest x-ray image dataset with multi-label annotated reports](https://mlsanity.com/paper/1901.07441/) (2019)
- [Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets](https://mlsanity.com/paper/1906.05474/) (2019)
- [Towards Generalist Biomedical AI](https://mlsanity.com/paper/2307.14334/) (2023)
- [MedAlpaca -- An Open-Source Collection of Medical Conversational AI Models and Training Data](https://mlsanity.com/paper/2304.08247/) (2023)
- [VinDr-CXR: An open dataset of chest X-rays with radiologist's annotations](https://mlsanity.com/paper/2012.15029/) (2020)
- [PMC-CLIP: Contrastive Language-Image Pre-training using Biomedical Documents](https://mlsanity.com/paper/2303.07240/) (2023)

## Built on by (most cited first, 17 of 17)

- [The Rise of Small Language Models in Healthcare: A Comprehensive Survey](https://mlsanity.com/paper/2504.17119/) (2025)
- [MediQAl: A French Medical Question Answering Dataset for Knowledge and Reasoning Evaluation](https://mlsanity.com/paper/2507.20917/) (2025)
- [CLIR-Bench: Benchmarking Multimodal Question Answering over Irregular Clinical Time Series](https://mlsanity.com/paper/2607.09880/) (2026)
- [EHRBench: An Automated and Reliable EHR-based Benchmark for Clinical Decision Making with LLMs](https://mlsanity.com/paper/2605.30637/) (2026)
- [A Comparative Study of Decoding Strategies in Medical Text Generation](https://mlsanity.com/paper/2508.13580/) (2025)
- [Evaluating Large Language Models for Evidence-Based Clinical Question Answering](https://mlsanity.com/paper/2509.10843/) (2025)
- [Towards Scalable SOAP Note Generation: A Weakly Supervised Multimodal Framework](https://mlsanity.com/paper/2506.10328/) (2025)
- [ImmunoFOMO: Are Language Models missing what oncologists see?](https://mlsanity.com/paper/2506.11478/) (2025)
- [Beyond the Leaderboard: Rethinking Medical Benchmarks for Large Language Models](https://mlsanity.com/paper/2508.04325/) (2025)
- [Skin-SOAP: A Weakly Supervised Framework for Generating Structured SOAP Notes](https://mlsanity.com/paper/2508.05019/) (2025)
- [Performance Assessment Strategies for Language Model Applications in Healthcare](https://mlsanity.com/paper/2509.08087/) (2025)
- ["Do I Trust the AI?" Towards Trustworthy AI-Assisted Diagnosis: Understanding User Perception in LLM-Supported Reasoning](https://mlsanity.com/paper/2601.19540/) (2026)
- [The Validity Gap in Health AI Evaluation: A Cross-Sectional Analysis of Benchmark Composition](https://mlsanity.com/paper/2603.18294/) (2026)
- [AcuityBench: Evaluating Clinical Acuity Identification and Uncertainty Alignment](https://mlsanity.com/paper/2605.11398/) (2026)
- [EVLA: An Electro-Aware Multimodal Assistant for Physically-Grounded Driving Reasoning and Control](https://mlsanity.com/paper/2606.28938/) (2026)
- [Healthier LLMs: Retrieval-Augmented Generation for Public Health Question Answering](https://mlsanity.com/paper/2607.06641/) (2026)
- [MS-Exam-Gen: An Automatic Benchmark Construction Toolkit for Evaluating LLMs on Multiple Sclerosis-MRI Imaging Knowledge](https://mlsanity.com/paper/2610.06170/) (2026)

## Abstract (arXiv)

With the increasing application of large language models (LLMs) in the medical domain, evaluating these models' performance using benchmark datasets has become crucial. This paper presents a comprehensive survey of various benchmark datasets employed in medical LLM tasks. These datasets span multiple modalities including text, image, and multimodal benchmarks, focusing on different aspects of medical knowledge such as electronic health records (EHRs), doctor-patient dialogues, medical question-answering, and medical image captioning. The survey categorizes the datasets by modality, discussing their significance, data structure, and impact on the development of LLMs for clinical tasks such as diagnosis, report generation, and predictive decision support. Key benchmarks include MIMIC-III, MIMIC-IV, BioASQ, PubMedQA, and CheXpert, which have facilitated advancements in tasks like medical report generation, clinical summarization, and synthetic data generation. The paper summarizes the challenges and opportunities in leveraging these benchmarks for advancing multimodal medical intelligence, emphasizing the need for datasets with a greater degree of language diversity, structured omics data, and innovative approaches to synthesis. This work also provides a foundation for future research in the application of LLMs in medicine, contributing to the evolving field of medical artificial intelligence.