# SurgPointTransformer: Vertebrae Shape Completion with RGB-D Data

arXiv: https://arxiv.org/abs/2410.01443 · HTML: https://mlsanity.com/paper/2410.01443/

## Key facts

- No citing papers in the map yet (data through 14 Oct 2026).
- Builds on 13 of its 28 references that are in the map.
- First posted on arXiv 2 Oct 2024.

## Builds on (most cited first, 13 of 13)

- [PointNet: Deep Learning on Point Sets for 3D Classification and Segmentation](https://mlsanity.com/paper/1612.00593/) (2016)
- [PointNet++: Deep Hierarchical Feature Learning on Point Sets in a Metric Space](https://mlsanity.com/paper/1706.02413/) (2017)
- [Dynamic Graph CNN for Learning on Point Clouds](https://mlsanity.com/paper/1801.07829/) (2018)
- [Open3D: A Modern Library for 3D Data Processing](https://mlsanity.com/paper/1801.09847/) (2018)
- [PoinTr: Diverse Point Cloud Completion with Geometry-Aware Transformers](https://mlsanity.com/paper/2108.08839/) (2021)
- [What Do Single-view 3D Reconstruction Networks Learn?](https://mlsanity.com/paper/1905.03678/) (2019)
- [Variational Relational Point Completion Network](https://mlsanity.com/paper/2104.10154/) (2021)
- [AdaPoinTr: Diverse Point Cloud Completion with Adaptive Geometry-Aware Transformers](https://mlsanity.com/paper/2301.04545/) (2023)
- [3D Point Cloud Denoising using Graph Laplacian Regularization of a Low Dimensional Manifold Model](https://mlsanity.com/paper/1803.07252/) (2018)
- [Comprehensive Review of Deep Learning-Based 3D Point Cloud Completion Processing and Analysis](https://mlsanity.com/paper/2203.03311/) (2022)
- [Multi-class point cloud completion networks for 3D cardiac anatomy reconstruction from cine magnetic resonance images](https://mlsanity.com/paper/2307.08535/) (2023)
- [Automatic registration with continuous pose updates for marker-less surgical navigation in spine surgery](https://mlsanity.com/paper/2308.02917/) (2023)
- [Anatomy Completor: A Multi-class Completion Framework for 3D Anatomy Reconstruction](https://mlsanity.com/paper/2309.04956/) (2023)

## Abstract (arXiv)

State-of-the-art computer- and robot-assisted surgery systems heavily depend on intraoperative imaging technologies such as CT and fluoroscopy to generate detailed 3D visualization of the patient's anatomy. While imaging techniques are highly accurate, they are based on ionizing radiation and expose patients and clinicians. This study introduces an alternative, radiation-free approach for reconstructing the 3D spine anatomy using RGB-D data. Drawing inspiration from the 3D "mental map" that surgeons form during surgeries, we introduce SurgPointTransformer, a shape completion approach for surgical applications that can accurately reconstruct the unexposed spine regions from sparse observations of the exposed surface. Our method involves two main steps: segmentation and shape completion. The segmentation step includes spinal column localization and segmentation, followed by vertebra-wise segmentation. The segmented vertebra point clouds are then subjected to SurgPointTransformer, which leverages an attention mechanism to learn patterns between visible surface features and the underlying anatomy. For evaluation, we utilize an ex-vivo dataset of nine specimens. Their CT data is used to establish ground truth data that were used to compare to the outputs of our methods. Our method significantly outperforms the state-of-the-art baselines, achieving an average Chamfer Distance of 5.39, an F-Score of 0.85, an Earth Mover's Distance of 0.011, and a Signal-to-Noise Ratio of 22.90 dB. This study demonstrates the potential of our reconstruction method for 3D vertebral shape completion. It enables 3D reconstruction of the entire lumbar spine and surgical guidance without ionizing radiation or invasive imaging. Our work contributes to computer-aided and robot-assisted surgery, advancing the perception and intelligence of these systems.