# DocGenome: An Open Large-scale Scientific Document Benchmark for Training and Testing Multi-modal Large Language Models

arXiv: https://arxiv.org/abs/2406.11633 · HTML: https://mlsanity.com/paper/2406.11633/

## Key facts

- Cited by 36 papers in the map (data through 14 Oct 2026).
- Placed in Document understanding and multimodal RAG, one of 16 directions in Multimodal LLMs / vision-language models.
- Builds on 43 of its 57 references that are in the map.
- First posted on arXiv 17 Jun 2024.

## Placed in

- Multimodal LLMs / vision-language models / [Document understanding and multimodal RAG](https://mlsanity.com/mllm/document-understanding-and-multimodal-rag/)

## Builds on (most cited first, 30 of 43)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale](https://mlsanity.com/paper/2010.11929/) (2020)
- [Masked Autoencoders Are Scalable Vision Learners](https://mlsanity.com/paper/2111.06377/) (2021)
- [Flamingo: a Visual Language Model for Few-Shot Learning](https://mlsanity.com/paper/2204.14198/) (2022)
- [Gemini 1.5: Unlocking multimodal understanding across millions of tokens of context](https://mlsanity.com/paper/2403.05530/) (2024)
- [MiniGPT-4: Enhancing Vision-Language Understanding with Advanced Large Language Models](https://mlsanity.com/paper/2304.10592/) (2023)
- [InternVL: Scaling up Vision Foundation Models and Aligning for Generic Visual-Linguistic Tasks](https://mlsanity.com/paper/2312.14238/) (2023)
- [DocVQA: A Dataset for VQA on Document Images](https://mlsanity.com/paper/2007.00398/) (2020)
- [How Far Are We to GPT-4V? Closing the Gap to Commercial Multimodal Models with Open-Source Suites](https://mlsanity.com/paper/2404.16821/) (2024)
- [CogVLM: Visual Expert for Pretrained Language Models](https://mlsanity.com/paper/2311.03079/) (2023)
- [CogAgent: A Visual Language Model for GUI Agents](https://mlsanity.com/paper/2312.08914/) (2023)
- [NExT-GPT: Any-to-Any Multimodal LLM](https://mlsanity.com/paper/2309.05519/) (2023)
- [LayoutLMv3: Pre-training for Document AI with Unified Text and Image Masking](https://mlsanity.com/paper/2204.08387/) (2022)
- [Pix2Struct: Screenshot Parsing as Pretraining for Visual Language Understanding](https://mlsanity.com/paper/2210.03347/) (2022)
- [Monkey: Image Resolution and Text Label Are Important Things for Large Multi-modal Models](https://mlsanity.com/paper/2311.06607/) (2023)
- [PubLayNet: largest dataset ever for document layout analysis](https://mlsanity.com/paper/1908.07836/) (2019)
- [GPT4RoI: Instruction Tuning Large Language Model on Region-of-Interest](https://mlsanity.com/paper/2307.03601/) (2023)
- [MoE-LLaVA: Mixture of Experts for Large Vision-Language Models](https://mlsanity.com/paper/2401.15947/) (2024)
- [mPLUG-DocOwl 1.5: Unified Structure Learning for OCR-free Document Understanding](https://mlsanity.com/paper/2403.12895/) (2024)
- [TextMonkey: An OCR-Free Large Multimodal Model for Understanding Document](https://mlsanity.com/paper/2403.04473/) (2024)
- [mPLUG-DocOwl: Modularized Multimodal Large Language Model for Document Understanding](https://mlsanity.com/paper/2307.02499/) (2023)
- [Emu: Generative Pretraining in Multimodality](https://mlsanity.com/paper/2307.05222/) (2023)
- [DocBank: A Benchmark Dataset for Document Layout Analysis](https://mlsanity.com/paper/2006.01038/) (2020)
- [DocLayNet: A Large Human-Annotated Dataset for Document-Layout Analysis](https://mlsanity.com/paper/2206.01062/) (2022)
- [Not All Experts are Equal: Efficient Expert Pruning and Skipping for Mixture-of-Experts Large Language Models](https://mlsanity.com/paper/2402.14800/) (2024)
- [Unifying Vision, Text, and Layout for Universal Document Processing](https://mlsanity.com/paper/2212.02623/) (2022)
- [Multimodal ArXiv: A Dataset for Improving Scientific Comprehension of Large Vision-Language Models](https://mlsanity.com/paper/2403.00231/) (2024)
- [Document Understanding Dataset and Evaluation (DUDE)](https://mlsanity.com/paper/2305.08455/) (2023)
- [ChartX & ChartVLM: A Versatile Benchmark and Foundation Model for Complicated Chart Reasoning](https://mlsanity.com/paper/2402.12185/) (2024)
- [DocLLM: A layout-aware generative language model for multimodal document understanding](https://mlsanity.com/paper/2401.00908/) (2023)

## Built on by (most cited first, 30 of 36)

- [MinerU: An Open-Source Solution for Precise Document Content Extraction](https://mlsanity.com/paper/2409.18839/) (2024)
- [OmniDocBench: Benchmarking Diverse PDF Document Parsing with Comprehensive Annotations](https://mlsanity.com/paper/2412.07626/) (2024)
- [mPLUG-DocOwl2: High-resolution Compressing for OCR-free Multi-page Document Understanding](https://mlsanity.com/paper/2409.03420/) (2024)
- [MonkeyOCR: Document Parsing with a Structure-Recognition-Relation Triplet Paradigm](https://mlsanity.com/paper/2506.05218/) (2025)
- [MME-Survey: A Comprehensive Survey on Evaluation of Multimodal LLMs](https://mlsanity.com/paper/2411.15296/) (2024)
- [dots.ocr: Multilingual Document Layout Parsing in a Single Vision-Language Model](https://mlsanity.com/paper/2512.02498/) (2025)
- [Document Parsing Unveiled: Techniques, Challenges, and Prospects for Structured Information Extraction](https://mlsanity.com/paper/2410.21169/) (2024)
- [Image Over Text: Transforming Formula Recognition Evaluation with Character Detection Matching](https://mlsanity.com/paper/2409.03643/) (2024)
- [A Survey of Multimodal Retrieval-Augmented Generation](https://mlsanity.com/paper/2504.08748/) (2025)
- [MinerU2.5-Pro: Pushing the Limits of Data-Centric Document Parsing at Scale](https://mlsanity.com/paper/2604.04771/) (2026)
- [GeoX: Geometric Problem Solving Through Unified Formalized Vision-Language Pre-training](https://mlsanity.com/paper/2412.11863/) (2024)
- [Marten: Visual Question Answering with Mask Generation for Multi-modal Document Understanding](https://mlsanity.com/paper/2503.14140/) (2025)
- [Docopilot: Improving Multimodal Models for Document-Level Understanding](https://mlsanity.com/paper/2507.14675/) (2025)
- [Infinity Parser: Layout Aware Reinforcement Learning for Scanned Document Parsing](https://mlsanity.com/paper/2510.15349/) (2025)
- [PDF-WuKong: A Large Multimodal Model for Efficient Long PDF Reading with End-to-End Sparse Sampling](https://mlsanity.com/paper/2410.05970/) (2024)
- [A Token-level Text Image Foundation Model for Document Understanding](https://mlsanity.com/paper/2503.02304/) (2025)
- [TrustGeoGen: Formal-Verified Data Engine for Trustworthy Multi-modal Geometric Problem Solving](https://mlsanity.com/paper/2504.15780/) (2025)
- [MonkeyOCR v1.5 Technical Report: Unlocking Robust Document Parsing for Complex Patterns](https://mlsanity.com/paper/2511.10390/) (2025)
- [OCRVerse: Towards Holistic OCR in End-to-End Vision-Language Models](https://mlsanity.com/paper/2601.21639/) (2026)
- [Chimera: Improving Generalist Model with Domain-Specific Experts](https://mlsanity.com/paper/2412.05983/) (2024)
- [Reading or Reasoning? Format Decoupled Reinforcement Learning for Document OCR](https://mlsanity.com/paper/2601.08834/) (2025)
- [DOCR-Inspector: Fine-Grained and Automated Evaluation of Document Parsing with VLM](https://mlsanity.com/paper/2512.10619/) (2025)
- [Milestones over Outcome: Unlocking Geometric Reasoning with Sub-Goal Verifiable Reward](https://mlsanity.com/paper/2601.05073/) (2026)
- [PaperMind: Benchmarking Agentic Reasoning and Critique over Scientific Papers in Multimodal LLMs](https://mlsanity.com/paper/2604.21304/) (2026)
- [MonkeyOCRv2: A Visual-Text Foundation Model for Document AI](https://mlsanity.com/paper/2607.11562/) (2026)
- [Infinity Parser: Layout Aware Reinforcement Learning for Scanned Document Parsing](https://mlsanity.com/paper/2506.03197/) (2025)
- [DocTron-Formula: Generalized Formula Recognition in Complex and Structured Scenarios](https://mlsanity.com/paper/2508.00311/) (2025)
- [MM-OptBench: A Solver-Grounded Benchmark for Multimodal Optimization Modeling](https://mlsanity.com/paper/2605.12154/) (2026)
- [SciDocBench: A Workflow-Centered Benchmark and Data Pipeline for Scientific Document Understanding](https://mlsanity.com/paper/2609.05141/) (2026)
- [ResearchArcade: Graph Interface for Academic Tasks](https://mlsanity.com/paper/2511.22036/) (2025)

## Abstract (arXiv)

Scientific documents record research findings and valuable human knowledge, comprising a vast corpus of high-quality data. Leveraging multi-modality data extracted from these documents and assessing large models' abilities to handle scientific document-oriented tasks is therefore meaningful. Despite promising advancements, large models still perform poorly on multi-page scientific document extraction and understanding tasks, and their capacity to process within-document data formats such as charts and equations remains under-explored. To address these issues, we present DocGenome, a structured document benchmark constructed by annotating 500K scientific documents from 153 disciplines in the arXiv open-access community, using our custom auto-labeling pipeline. DocGenome features four key characteristics: 1) Completeness: It is the first dataset to structure data from all modalities including 13 layout attributes along with their LaTeX source codes. 2) Logicality: It provides 6 logical relationships between different entities within each scientific document. 3) Diversity: It covers various document-oriented tasks, including document classification, visual grounding, document layout detection, document transformation, open-ended single-page QA and multi-page QA. 4) Correctness: It undergoes rigorous quality control checks conducted by a specialized team. We conduct extensive experiments to demonstrate the advantages of DocGenome and objectively evaluate the performance of large models on our benchmark.