# Inter- and intra-uncertainty based feature aggregation model for semi-supervised histopathology image segmentation

arXiv: https://arxiv.org/abs/2403.12767 · HTML: https://mlsanity.com/paper/2403.12767/

## Key facts

- Cited by 3 papers in the map (data through 14 Oct 2026).
- Builds on 47 of its 86 references that are in the map.
- First posted on arXiv 19 Mar 2024.

## Builds on (most cited first, 30 of 47)

- [Deep Residual Learning for Image Recognition](https://mlsanity.com/paper/1512.03385/) (2015)
- [U-Net: Convolutional Networks for Biomedical Image Segmentation](https://mlsanity.com/paper/1505.04597/) (2015)
- [Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift](https://mlsanity.com/paper/1502.03167/) (2015)
- [Dropout as a Bayesian Approximation: Representing Model Uncertainty in Deep Learning](https://mlsanity.com/paper/1506.02142/) (2015)
- [Delving Deep into Rectifiers: Surpassing Human-Level Performance on ImageNet Classification](https://mlsanity.com/paper/1502.01852/) (2015)
- [DeepLab: Semantic Image Segmentation with Deep Convolutional Nets, Atrous Convolution, and Fully Connected CRFs](https://mlsanity.com/paper/1606.00915/) (2016)
- [What Uncertainties Do We Need in Bayesian Deep Learning for Computer Vision?](https://mlsanity.com/paper/1703.04977/) (2017)
- [Multi-Scale Context Aggregation by Dilated Convolutions](https://mlsanity.com/paper/1511.07122/) (2015)
- [Semi-Supervised Semantic Segmentation with Cross Pseudo Supervision](https://mlsanity.com/paper/2106.01226/) (2021)
- [U2-Net: Going Deeper with Nested U-Structure for Salient Object Detection](https://mlsanity.com/paper/2005.09007/) (2020)
- [Uncertainty-aware Self-ensembling Model for Semi-supervised 3D Left Atrium Segmentation](https://mlsanity.com/paper/1907.07034/) (2019)
- [Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks](https://mlsanity.com/paper/1807.07356/) (2018)
- [Interpolation Consistency Training for Semi-Supervised Learning](https://mlsanity.com/paper/1903.03825/) (2019)
- [Rectifying Pseudo Label Learning via Uncertainty Estimation for Domain Adaptive Semantic Segmentation](https://mlsanity.com/paper/2003.03773/) (2020)
- [LinkNet: Exploiting Encoder Representations for Efficient Semantic Segmentation](https://mlsanity.com/paper/1707.03718/) (2017)
- [MultiResUNet : Rethinking the U-Net Architecture for Multimodal Biomedical Image Segmentation](https://mlsanity.com/paper/1902.04049/) (2019)
- [Evaluating Scalable Bayesian Deep Learning Methods for Robust Computer Vision](https://mlsanity.com/paper/1906.01620/) (2019)
- [Transformation Consistent Self-ensembling Model for Semi-supervised Medical Image Segmentation](https://mlsanity.com/paper/1903.00348/) (2019)
- [Context Prior for Scene Segmentation](https://mlsanity.com/paper/2004.01547/) (2020)
- [Bidirectional Copy-Paste for Semi-Supervised Medical Image Segmentation](https://mlsanity.com/paper/2305.00673/) (2023)
- [Mutual Consistency Learning for Semi-supervised Medical Image Segmentation](https://mlsanity.com/paper/2109.09960/) (2021)
- [DFANet: Deep Feature Aggregation for Real-Time Semantic Segmentation](https://mlsanity.com/paper/1904.02216/) (2019)
- [Searching for Efficient Multi-Scale Architectures for Dense Image Prediction](https://mlsanity.com/paper/1809.04184/) (2018)
- [MILD-Net: Minimal Information Loss Dilated Network for Gland Instance Segmentation in Colon Histology Images](https://mlsanity.com/paper/1806.01963/) (2018)
- [DCAN: Deep Contour-Aware Networks for Accurate Gland Segmentation](https://mlsanity.com/paper/1604.02677/) (2016)
- [Squeeze-and-Attention Networks for Semantic Segmentation](https://mlsanity.com/paper/1909.03402/) (2019)
- [Micro-Net: A unified model for segmentation of various objects in microscopy images](https://mlsanity.com/paper/1804.08145/) (2018)
- [A Data-scalable Transformer for Medical Image Segmentation: Architecture, Model Efficiency, and Benchmark](https://mlsanity.com/paper/2203.00131/) (2022)
- [Double-Uncertainty Weighted Method for Semi-supervised Learning](https://mlsanity.com/paper/2010.09298/) (2020)
- [Local contrastive loss with pseudo-label based self-training for semi-supervised medical image segmentation](https://mlsanity.com/paper/2112.09645/) (2021)

## Built on by (most cited first, 3 of 3)

- [Full-scale Representation Guided Network for Retinal Vessel Segmentation](https://mlsanity.com/paper/2501.18921/) (2025)
- [Iterative pseudo-labeling based adaptive copy-paste supervision for semi-supervised tumor segmentation](https://mlsanity.com/paper/2508.04044/) (2025)
- [DuetMatch: Harmonizing Semi-Supervised Brain MRI Segmentation via Decoupled Branch Optimization](https://mlsanity.com/paper/2510.16146/) (2025)

## Abstract (arXiv)

Acquiring pixel-level annotations is often limited in applications such as histology studies that require domain expertise. Various semi-supervised learning approaches have been developed to work with limited ground truth annotations, such as the popular teacher-student models. However, hierarchical prediction uncertainty within the student model (intra-uncertainty) and image prediction uncertainty (inter-uncertainty) have not been fully utilized by existing methods. To address these issues, we first propose a novel inter- and intra-uncertainty regularization method to measure and constrain both inter- and intra-inconsistencies in the teacher-student architecture. We also propose a new two-stage network with pseudo-mask guided feature aggregation (PG-FANet) as the segmentation model. The two-stage structure complements with the uncertainty regularization strategy to avoid introducing extra modules in solving uncertainties and the aggregation mechanisms enable multi-scale and multi-stage feature integration. Comprehensive experimental results over the MoNuSeg and CRAG datasets show that our PG-FANet outperforms other state-of-the-art methods and our semi-supervised learning framework yields competitive performance with a limited amount of labeled data.