# Sentence Bag Graph Formulation for Biomedical Distant Supervision Relation Extraction

arXiv: https://arxiv.org/abs/2310.18912 · HTML: https://mlsanity.com/paper/2310.18912/

## Key facts

- Cited by 1 papers in the map (data through 14 Oct 2026).
- Builds on 23 of its 55 references that are in the map.
- First posted on arXiv 29 Oct 2023.

## Builds on (most cited first, 23 of 23)

- [Attention Is All You Need](https://mlsanity.com/paper/1706.03762/) (2017)
- [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://mlsanity.com/paper/1810.04805/) (2018)
- [PyTorch: An Imperative Style, High-Performance Deep Learning Library](https://mlsanity.com/paper/1912.01703/) (2019)
- [Graph Attention Networks](https://mlsanity.com/paper/1710.10903/) (2017)
- [Neural Machine Translation by Jointly Learning to Align and Translate](https://mlsanity.com/paper/1409.0473/) (2014)
- [Learning Phrase Representations using RNN Encoder-Decoder for Statistical Machine Translation](https://mlsanity.com/paper/1406.1078/) (2014)
- [Empirical Evaluation of Gated Recurrent Neural Networks on Sequence Modeling](https://mlsanity.com/paper/1412.3555/) (2014)
- [BioBERT: a pre-trained biomedical language representation model for biomedical text mining](https://mlsanity.com/paper/1901.08746/) (2019)
- [Google's Neural Machine Translation System: Bridging the Gap between Human and Machine Translation](https://mlsanity.com/paper/1609.08144/) (2016)
- [Bidirectional Attention Flow for Machine Comprehension](https://mlsanity.com/paper/1611.01603/) (2016)
- [Entity-Relation Extraction as Multi-Turn Question Answering](https://mlsanity.com/paper/1905.05529/) (2019)
- [Dynamic Coattention Networks For Question Answering](https://mlsanity.com/paper/1611.01604/) (2016)
- [RESIDE: Improving Distantly-Supervised Neural Relation Extraction using Side Information](https://mlsanity.com/paper/1812.04361/) (2018)
- [Improving Distantly Supervised Relation Extraction using Word and Entity Based Attention](https://mlsanity.com/paper/1804.06987/) (2018)
- [Classifying Relations by Ranking with Convolutional Neural Networks](https://mlsanity.com/paper/1504.06580/) (2015)
- [Distant Supervision Relation Extraction with Intra-Bag and Inter-Bag Attentions](https://mlsanity.com/paper/1904.00143/) (2019)
- [Semantic Relation Classification via Bidirectional LSTM Networks with Entity-aware Attention using Latent Entity Typing](https://mlsanity.com/paper/1901.08163/) (2019)
- [CIL: Contrastive Instance Learning Framework for Distantly Supervised Relation Extraction](https://mlsanity.com/paper/2106.10855/) (2021)
- [Improving Distantly-Supervised Relation Extraction through BERT-based Label & Instance Embeddings](https://mlsanity.com/paper/2102.01156/) (2021)
- [Distantly-Supervised Long-Tailed Relation Extraction Using Constraint Graphs](https://mlsanity.com/paper/2105.11225/) (2021)
- [Empower Distantly Supervised Relation Extraction with Collaborative Adversarial Training](https://mlsanity.com/paper/2106.10835/) (2021)
- [HiCLRE: A Hierarchical Contrastive Learning Framework for Distantly Supervised Relation Extraction](https://mlsanity.com/paper/2202.13352/) (2022)
- [PARE: A Simple and Strong Baseline for Monolingual and Multilingual Distantly Supervised Relation Extraction](https://mlsanity.com/paper/2110.07415/) (2021)

## Built on by (most cited first, 1 of 1)

- [Biomedical Relation Extraction via Adaptive Document-Relation Cross-Mapping and Concept Unique Identifier](https://mlsanity.com/paper/2501.05155/) (2025)

## Abstract (arXiv)

We introduce a novel graph-based framework for alleviating key challenges in distantly-supervised relation extraction and demonstrate its effectiveness in the challenging and important domain of biomedical data. Specifically, we propose a graph view of sentence bags referring to an entity pair, which enables message-passing based aggregation of information related to the entity pair over the sentence bag. The proposed framework alleviates the common problem of noisy labeling in distantly supervised relation extraction and also effectively incorporates inter-dependencies between sentences within a bag. Extensive experiments on two large-scale biomedical relation datasets and the widely utilized NYT dataset demonstrate that our proposed framework significantly outperforms the state-of-the-art methods for biomedical distant supervision relation extraction while also providing excellent performance for relation extraction in the general text mining domain.